Phocoena sinus (vaquita): 116764180
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Entry
116764180 CDS
T07759
Symbol
POLR1B
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA2 isoform X1
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
116764180 (POLR1B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psiu03021
]
116764180 (POLR1B)
Enzymes [BR:
psiu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
116764180 (POLR1B)
Transcription machinery [BR:
psiu03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
116764180 (POLR1B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpa2_4
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-GeneID:
116764180
NCBI-ProteinID:
XP_032508410
Ensembl:
ENSPSNG00000014722
UniProt:
A0A8C9CP96
LinkDB
All DBs
Position
13:complement(78864783..78888826)
Genome browser
AA seq
1153 aa
AA seq
DB search
MLSGACEAVAGIRSAGGLMDPDGRWRHLPSGPSLKHLTDPAYGIPREQQKPALQALTRAH
VESFNYAVREGLSHAVQAIPPFEFAFKDERISLTIVDALISPPTVPKGSICKELNVYPAE
CRGRRSTYRGKLTADISWAVNGISKGIIKQFLGYVPIMVKSKLCNLYNLPPKALIQHHEE
AEEMGGYFIINGIEKVIRMLIMPRRNFPIAMVRPKWKSRGPGYTQYGVSMHCVREEHSAV
NMNLHYLENGTVMLNFIYRKELFFFPLGFALKALVSFSDYQIFQELIKGKEDDSFFRNSV
SQMLRIVMEEGCSTQKQVLSYLGERFRVKLSLPDWYPNEHAAEFLFSQCICIHSKSNTEK
FYVLCLMTRKLFALAKGECMEENPDSLVNQEVLTPGQLFLMFLKEKLEAWLASIKIAIDK
KAQKTNVSLNTENLMKIFTLGTDLTKPFEYLLATGNLRSKTGLGFLQDSGLCVVADKLNF
IRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTTICEVVT
QFVYTASIPALLCNLGVTPVDGAPHRPYSECYPVLLDGVMVGWADKELVPGIADSLRHFK
VLREKRIPPWMEVVLVPMTGKPSLYPGLYLFTTPCRLVRPVQNLELGKEELIGTMEQIFM
NVAVFEDEVLAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLT
FQDRSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKA
SWERGFAHGSVYKSECIDLSEKIKQGDDSLVFGVKPGDPRILQKLDDDGLPFIGAQLQYG
DPYYSYLNLNTGESFVMYYKSKENCIVDNIKVCSNDTGNGKFKCVCITMRVPRNPTIGDK
FASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHG
LCHDATPFTFSEENSALEYFGEMLKAAGYNYYGTERLYSGISGLELDADIFIGVVYYQRL
RHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCS
DRSVAHVCVKCGSLLSPLLEKPPPSWSTMRNRKYSCTLCNRSDTIDTVSVPYVFRYFVAE
LAAMNIKVKLDIV
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgctttccggcgcgtgtgaagctgttgctggcatccggagtgcaggcggactcatggat
cccgacggccggtggcggcacctacccagcgggcccagcctaaagcacttgaccgacccc
gcttacgggatcccgcgggagcagcaaaagccagcgctgcaggcgctgacgcgggcgcat
gtcgagtccttcaactacgctgtgcgcgaggggctcagccacgcggtgcaggccatccct
ccctttgaatttgctttcaaagatgagcggatctctcttactattgtggatgctctcatc
agtccacccacagttccaaaagggagcatctgtaaagagctcaatgtttatccagcagaa
tgccggggccgaaggagcacctaccggggaaagctgacggccgatatcagctgggcagtg
aatggaatctcaaaaggaatcattaaacagtttcttggctatgttcccatcatggtgaaa
tccaagctttgcaacttatacaaccttcctccaaaagccctcatccagcaccacgaggaa
gcagaggaaatgggaggctattttataatcaatggcatcgaaaaagtcatccgaatgttg
attatgcctcgcagaaatttccccatcgcaatggtaagaccaaaatggaaaagcagaggg
cctggctatactcagtatggagtttcaatgcactgtgtgagggaagaacattccgccgtc
aatatgaaccttcactacttggaaaatggcacggttatgttgaactttatttaccggaaa
gaactgtttttttttcctttgggatttgcacttaaggcacttgtcagcttttccgattat
cagatttttcaggaactcatcaaaggaaaggaagatgactctttctttaggaactctgtt
tctcagatgttaaggattgtaatggaagagggatgttccacacaaaaacaggtccttagc
tatctgggtgaacgcttcagagtcaaactcagtcttcccgactggtacccaaatgaacac
gctgcagagtttctcttcagccagtgcatctgtatccactcgaaatccaacactgaaaag
ttttatgtgctttgtctcatgacccggaagctctttgctttagccaaaggagagtgcatg
gaggagaatcctgacagtttagtgaatcaagaggtcctgacccccgggcagctcttcctc
atgtttctgaaggaaaaattggaagcttggttagcatctattaaaatagctatagacaag
aaggcccagaagaccaatgtgtccttaaacactgaaaatttgatgaagatttttactctg
ggaacagaccttacaaaaccatttgaatatcttcttgctactgggaatctacgttctaaa
acaggtcttggcttcctgcaagattccggactttgtgttgtggctgacaagctgaacttc
atacgctatctctcccatttccgctgtgtgcacagaggggcagattttgccaagatgcgg
accaccacagtacgcaggctgctgccggagtcctggggtttcctctgccccgtgcacacc
cccgatggggagccctgtggtctgatgaaccacttaaccaccatatgtgaggtcgtcaca
cagtttgtgtatacagcatctattccagctttgctctgcaacttgggcgtcactccagtt
gatggagctccacatcggccgtacagcgagtgctaccctgtcctgctggacggtgtcatg
gttggctgggcagataaggagcttgttcctggcattgccgattctctccgacattttaag
gttttgagagaaaaaagaattcctccctggatggaggtggtcctggtccccatgacagga
aaaccaagtctgtacccaggattgtacctttttaccactccttgtagactggtgcggcct
gtgcagaacttggaattgggcaaagaagaactaattggaactatggaacagatcttcatg
aacgttgctgtctttgaggatgaggttttggctggcgttaccacccaccaggagctcttc
cctcacagcctgctgagtgtgatcgccaacttcatccctttctctgatcacaaccaaagt
ccaagaaacatgtaccagtgccagatgggtaagcagactatgggctttccactcctcact
tttcaagaccggtcagataataaactgtatcgtcttcagactccacagagccctttagtg
agaccatacatgtatgattattatgacatggataactacccaattgggacaaatgccatt
gtcgctgttatttcttacactggctatgatatggaagatgccatgattgtgaataaggcc
tcttgggaacgaggctttgcccatggaagtgtctacaagtccgagtgtatagatctgtct
gaaaaaatcaaacaaggagatgacagtctggtgtttggagtcaaacctggtgacccacgg
attctgcagaagttggatgatgacggattgccatttattggagcacaactgcagtatgga
gatccatattacagctacctaaacctcaacaccggggaaagctttgtgatgtactataag
agtaaggaaaattgtattgtggataacatcaaagtgtgcagtaatgacactggaaatggc
aaattcaagtgtgtttgcatcacgatgagagtccctcggaacccaactatcggggataaa
tttgccagtcgtcacgggcagaagggcatcttgagcagactgtggccagttgaggacatg
ccattcactgagagcgggatggttccagacattctgttcaatcctcacggttttccatcc
cgcatgaccatcggtatgttgattgagagcatggcagggaagtctgcagctttacatggt
ctctgccatgatgctacgcccttcaccttctcagaggagaactcggccctggaatacttt
ggtgagatgttgaaggctgctggctacaactactatggcactgagaggttgtatagtggc
atcagtgggctagagctggacgcagacatcttcataggtgtggtttattaccaacgctta
cgccacatggtctcagacaaattccaagtgaggacaacaggagccagagacaaagtcact
aaccagcctatcgggggaaggaatgtccagggtggaatccgttttggggagatggagcgg
gatgctcttttagctcatggtacatcttttctccttcacgaccggctcttcaactgctcg
gatcggtctgtagcccacgtgtgtgtgaagtgtggtagtttgctctccccgctgttggag
aagccacccccatcgtggtccaccatgcgcaacaggaagtacagctgtactctgtgtaac
cgcagtgacaccatcgacactgtttccgtgccttacgtctttcggtattttgtagctgaa
ctggcagctatgaacatcaaagtgaaactggatatcgtttaa
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integrated database retrieval system
