Phocoena sinus (vaquita): 116764237
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Entry
116764237 CDS
T07759
Symbol
SNRNP200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase isoform X1
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116764237 (SNRNP200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
psiu03041
]
116764237 (SNRNP200)
Enzymes [BR:
psiu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116764237 (SNRNP200)
Spliceosome [BR:
psiu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
116764237 (SNRNP200)
Complex C
U5 SnRNP specific factors
116764237 (SNRNP200)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
DUF603
Motif
Other DBs
NCBI-GeneID:
116764237
NCBI-ProteinID:
XP_032508532
Ensembl:
ENSPSNG00000004940
UniProt:
A0A8C9DZG1
LinkDB
All DBs
Position
13:complement(81173193..81200129)
Genome browser
AA seq
2146 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTK
PQMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKIT
DYGGDKEIQNMDDNIDETYGVNVQFESDEEEGDEDVYGEVREEASDDDMEGDEAVVRCTL
SANLVASGELMSSKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEADPELSKFL
YQLHETEKEDLIREERSRRERVRQSRMDTDLETMDLDQGGEALAPRQVLDLEDLVFTQGS
HFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKT
LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMSMLREIGKHINMDGTINVDDFKIIY
IAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKG
GERTYTQLVRLIILDEIHLLHDDRGPVLEALVARTIRNIEMTQEDVRLIGLSATLPNYED
VATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQ
VLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPY
GFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGR
WTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDM
LNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTA
ALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSL
SSEFKNITVREVSPLSVLELEEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQL
KLEGFALMADMVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLR
QFRKLPEEVVKKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHL
QPITRSTLKVELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEH
LITFFVPVFEPLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVS
ALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQ
NSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPE
KWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVAL
SSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAI
TKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLK
ETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYN
GKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDH
CMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVE
QTLSDLEQSKCISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIIS
NAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQS
DTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEH
IKRCTDKGVESVFDIMEMEDEERNALLQLSDSQIADVARFCNRYPNIELSYEVVDKDSIR
SGGPVVVLVQLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKV
KLDFVAPATGAHNYTLYFMSDAYMGCDQEYKFSVDVKEAETDSDSD
NT seq
6441 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgtgaccgctcgtagcctgcagtacgagtacaaggcgaactcgaatcttgtc
ctccaagctgaccgctctctcattgaccggacccgccgggatgaacccacaggagaggtt
ctgtccctggttgggaagctcgagggcacccggatgggagataaggctcaacggacgaaa
ccacagatgcaagaggaaagaagagccaagcgaagaaagcgtgatgaggaccggcatgac
atcaacaagatgaagggttatactctgctctcggagggcattgatgagatggtgggcatc
atctacaagcccaaaactaaagagacccgggagacctacgaagtgctgctcagcttcatc
caggctgcacttggggaccagccacgtgatatcctttgtggggcagctgatgaagttcta
gctgttttaaagaatgaaaagcttcgggacaaggaaaggagaaaggagattgatctgctg
ctgggtcagacagatgatacaagataccatgtgttagtgaacctgggtaaaaagatcaca
gactatggtggagacaaggaaatccagaatatggatgacaacattgatgagacgtatggt
gtgaatgtacagtttgagtctgatgaggaggaaggtgatgaagatgtgtacggggaggtt
cgagaagaggcatcggatgacgacatggaaggggacgaggcggtggtgcgctgcaccctc
tcggctaatcttgtggcctcaggggagctgatgagttccaagaagaaggatttgcaccct
cgggatattgatgccttttggctccagcggcagctcagtcgcttctatgatgatgccatt
gtgtcgcagaagaaggcagatgaagtcttggagattttgaagacggccagtgatgaccgg
gaatgtgagaaccagctggttctgctccttggtttcaacacttttgattttattaaggtg
ttgcggcagcacaggatgatgattttgtactgtaccttgctggccagtgcacagagtgaa
gctgaaaaggaaaggatcatgggaaagatggaagctgacccagagctatccaagttcctc
tatcagctccacgaaacggagaaggaggatctgatccgggaggagaggtcccggagagag
cgagtgcgtcagtcccggatggacacagatctggaaaccatggatctggaccagggtgga
gaggcactggctccgcgacaggttctggacttggaggacctagtttttacccaggggagc
cacttcatggccaacaaacgctgtcagcttcctgacggatcgttccgtcgccagcgcaag
ggctatgaggaggtgcatgtgcctgctctgaagcccaagcccttcggctctgaagaacaa
cttcttccagtggagaaactgcccaagtatgcccaggctggatttgagggcttcaaaaca
ctgaatcggatccagagtaagctctaccgtgctgctctggagacggatgagaatctgctg
ctctgcgctcctaccggtgctggtaagaccaacgtggccctgatgtctatgctccgagag
atagggaagcacattaacatggatggcactatcaacgtggatgacttcaagatcatctac
atcgcccccatgcggtctttggtgcaggagatggtgggcagttttggaaagcgcctggcc
acgtacggcatcactgttgcagaactgactggagaccaccagctgtgcaaggaggagatc
agcgccactcagatcatcgtctgcacccctgagaagtgggacatcattacccgcaagggt
ggggagcggacctacacccagctcgtgcgactcatcatcctggatgagatccatcttctc
cacgatgacagaggtcctgtcttagaagcgttggtggccaggaccatccggaacattgag
atgacccaagaggatgtccgactcatcggtcttagtgccaccctccccaactatgaagat
gtggccacctttctgcgtgtggaccctgccaagggcctattctatttcgacaacagcttc
cgcccagtgcctctagaacagacttacgtgggcattacggagaaaaaagctatcaagcgt
ttccagatcatgaacgaaattgtctatgagaaaatcatggaacatgctggaaaaaatcag
gtgctggtgtttgtccactcccggaaggagactgggaagacggccagggccatccgggac
atgtgcctggagaaggacacgctgggtctgtttctgagagagggctcggcctccacagaa
gtccttcggacagaagccgagcagtgcaagaacctggagctgaaggatctcctgccctat
ggctttgctattcatcacgcgggcatgaccagagttgaccggacactcgtagaggatctt
tttgctgataaacacattcaggttttagtttccacggcaaccctggcttggggtgtgaat
ctccccgcgcatactgtcatcatcaaaggcacccaggtgtacagtccagagaaggggcgc
tggacagaactgggggcactggacatcctgcagatgctgggacgagcaggaagacctcag
tatgacaccaagggcgaaggcatactcatcacttctcatggggagctgcagtactacctg
tccctcctcaatcagcagcttcctattgagagccagatggtatcaaagctgcctgacatg
ctcaacgcggaaatcgtgctggggaacgtccagaacgcaaaggatgcagtgaactggctg
ggctacgcctacctgtatatccgaatgctccgatccccaaccctctatggcatctctcat
gatgacctcaagggagatcccctgctggaccagcgccgactggatctggttcatactgct
gccttgatgctggataagaacaatctggtcaagtacgacaagaagacaggcaacttccag
gtgacagaactcggtcgtatagccagccactactacatcaccaatgatacggtacagacc
tacaaccagctgctaaagcccaccctgagtgagattgagcttttcagagtcttctccttg
tcctcagagttcaagaacatcactgtgagagaagtgagtccactcagcgtgttggaactg
gaagaggagaagctggagctgcagaagttgctggagagggtgcccatccctgtaaaggag
agcattgaggaacccagtgcgaagatcaatgtgcttctccaagctttcatctcgcaactg
aaattggagggctttgcgttgatggccgacatggtatatgttacccagtcggctggccgg
ttgatgcgtgccatctttgaaattgtcctgaaccgaggctgggcgcagcttacagacaag
accctgaacctctgcaagatgattgacaaacgcatgtggcagtccatgtgtcctctgcgc
cagttccggaaactccctgaggaagtagtgaagaagatcgagaagaaaaacttccctttt
gagcgtctgtatgacctgaatcacaatgagataggggagctcatccgcatgcccaagatg
gggaagaccatccacaagtacgtccacctgttccccaagctggagttgtcggtgcatctg
cagcctatcacgcgctccacgctgaaggtggagctgaccatcacgcccgacttccagtgg
gatgaaaaggtccatggttcctcagaggcgttctggattctggtggaggatgtggacagc
gaggtgatcctgcaccacgagtacttcctactcaaggccaagtatgcgcaggacgagcac
ctcattacgttcttcgtgcccgtctttgaaccgctgccccctcagtacttcatccgtgtg
gtgtctgaccgctggctctcttgtgagacccagctgcctgtctctttccggcacctgatc
ctaccagagaagtacccacccccaaccgagcttctggacctgcagcccttgcccgtgtct
gccctgagaaacagtgcctttgagagcctttaccaagataaatttcctttcttcaacccc
atccagacccaggtgttcaacaccgtgtacaacagcgatgacaacgtgtttgtgggggcc
cccacgggcagcgggaagaccatctgtgcggagtttgccatcctgcggatgctgctacag
aactcggaggggcgctgtgtctacatcacccccatggaggctctggcggagcaggtgtac
atggactggtacgagaagttccaggacaggctcaacaagaaggtggtgctcctgacgggg
gagaccagcacggacctgaagcttctgggcaaaggcaacatcatcatcagcacccccgag
aagtgggacatcctttcccggcggtggaagcagcgcaagaatgtccagaacatcaacctc
tttgtggtggatgaggtccaccttatcgggggcgagaatgggcccgtgctggaggtgatc
tgctcccggatgcgctacatctcctcccagatcgagaggcccattcgcattgtggccctc
agctcctcgctctcaaacgcgaaggacgtggcccactggctggggtgcagcgccacctcc
accttcaacttccacccgaacgtgcgccccgtgcccttggagctgcacatccagggcttc
aacattagccacacgcagactcgcctgctgtccatggccaagcctgtgtaccacgccatc
accaagcactcgcccaagaagcctgtcattgtctttgttccatctcgcaagcagacgcgc
ctcaccgccatcgacatcctcaccacgtgtgcggccgacatccagcggcagaggttcctg
cactgcacggagaaggacctgatcccctacctggagaagctgagtgacagcacgctcaag
gagacgctgctaaacggggtgggctacctgcacgaggggctcagccccatggagcggcgc
ctggtggagcagctcttcagctcaggggctatccaggtggtggtggcttctcggagtctc
tgctggggcatgaatgtggccgcccacctggtgattatcatggatacccagtactacaac
ggcaagatccacgcgtacgtggattaccccatctacgacgtgctgcagatggtgggacac
gccaaccgccctttgcaggatgacgaggggcgctgcgttatcatgtgccagggctccaaa
aaggatttcttcaaaaagttcttatatgagcctttgccagtagagtctcacctggaccac
tgtatgcatgaccacttcaatgctgagatcgtcaccaagaccatcgagaacaagcaggac
gccgtggactacctcacctggacctttctgtaccgccgcatgacacagaaccccaattat
tacaacctgcagggtatctcacatcgtcacctgtctgaccacttgtcggagctcgtggaa
caaaccctgagtgacctggagcagtccaagtgcatcagcattgaggacgagatggacgtg
gcgcctctgaacctgggcatgatcgctgcctactattacatcaactacaccaccattgag
ctcttcagcatgtccctgaatgccaagaccaaggtgcgagggcttattgagatcatctcc
aatgcggccgagtatgagaacattcccatccggcaccatgaagacaacctcctgcggcag
ttggcccagaaggtcccccacaagttgaataaccctaagttcaatgacccgcatgtcaag
accaacctgcttctgcaggctcacctgtcccgcatgcagctgagtgctgagctgcagtca
gatacagaggagatccttagcaaggccatccggctcatccaggcctgtgtggatgtcctc
tccagcaacgggtggctcagcccagctctggcagccatggagctggcccagatggtcacc
caagctatgtggtccaaggactcatacctgaaacagctgccacacttcacctcagagcac
atcaaacgttgcacagacaagggggtggagagtgtttttgacatcatggagatggaggat
gaagagcgcaacgcgttgcttcagctgtccgatagccagatcgcagacgtggcccgcttc
tgtaaccgctaccccaacatcgagctgtcctacgaggtggtggacaaggacagcatccgc
agtggcgggccggttgtggtgctggtgcagctggagcgagaggaggaagtcacaggccct
gtgatcgcgcctctcttcccacagaaacgtgaagagggctggtgggtggtgatcggagat
gccaagtcgaatagcctcatttccatcaagaggctgaccctgcagcagaaggccaaggtg
aagctcgactttgtggccccggccactggcgcccacaactacactctgtacttcatgagt
gacgcttacatgggatgtgaccaggagtacaaattcagcgtggacgtgaaagaagctgag
acagacagtgactcagactga
DBGET
integrated database retrieval system
