Phocoena sinus (vaquita): 116764378
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Entry
116764378 CDS
T07759
Symbol
TAF1B
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit B isoform X1
KO
K15213
TATA box-binding protein-associated factor RNA polymerase I subunit B
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psiu03021
]
116764378 (TAF1B)
Transcription machinery [BR:
psiu03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
116764378 (TAF1B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rrn7_cyclin_C
Zn_ribbon_RRN7
Rrn7_cyclin_N
DUF7339
DUF4661
Zn_ribbon_NOB1
Motif
Other DBs
NCBI-GeneID:
116764378
NCBI-ProteinID:
XP_032508858
Ensembl:
ENSPSNG00000022554
UniProt:
A0A8C9L0Q7
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Position
13:6899307..6958316
Genome browser
AA seq
590 aa
AA seq
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MDLEEAKEFKDRCSQCAAVSWGLTDEGKYYCTSCHNVTERSREVINTGAIPNTKIQAINR
GLKRKRKLEKGWDWYVCEGFQHILYQQAKALQTLGVGPELKNEVLHNFWKRYLQKSKQAY
CKNPVYTSRRKTTVLEDNPSHSDWDSEPELLSDLSCPSFVESGAESQPDVHTQKPFPIIK
ASQSETASVCSGSLDGVEYSLRKEKGIVKMTVPRTLAFCYLSLLWQRETLTLADLLRFVE
EEHIPYINAFQHFPEEMKLYGRDKGIFAIESWPNYEDIYKKIIEVATFLDLPRFPDITED
CYLHPNILCMKYLMEVNLPDEMHDLTCHVVKVTGMGEVDFLTFDPIAKKGKTVKYDVQAV
AVIVVVLKLLFLLDDNLEWSLSNIAEKYNEKNEEDKPWFDFRKWYQVMKTAVDEKKQKWE
EARAKYLWKSEKPLYHSAIDRSVVYKRREMVVSLQKQFSTLVGSTPTVEKQSPSSFQFSW
TEEGSDRTCFHGHSLQGVLKQKGQSLMTKNSLYWLSTQKFCKSYCKHVTTYEESNFSLSY
QFILNLFSFLLRIKTSLLHEEVSLIEKRLFKAKYSTTKKKSSRSRKARKC
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atggacctggaggaggcgaaagagttcaaagaccgttgttctcagtgtgctgctgtctct
tggggtctcactgatgaaggcaaatattattgcacttcttgccacaatgttacagaaaga
tctagggaagttataaacactggggctattcctaatactaaaatacaagccatcaaccgg
ggacttaaaagaaaacgaaaacttgagaaaggctgggattggtatgtgtgcgaaggtttt
cagcacatactttatcaacaagcaaaagccttacagacccttggagtaggcccagagtta
aagaatgaagttttacataatttttggaagcgctaccttcagaagagcaagcaggcatat
tgtaaaaacccagtttataccagtagaaggaaaactacggtattagaagataatccaagt
cattcagactgggacagtgagcctgagctgctgagtgacctgagctgtccttcttttgtt
gaaagtggagcagaatctcagcctgatgtccacactcaaaagcctttccccatcatcaaa
gcatcacaatcagaaacagcatctgtctgttctggatctcttgacggagttgagtattca
ctgcgaaaggagaagggaattgtgaagatgactgtgccacggacgctagctttctgctac
ctgtcattgctttggcagagggagacactcactcttgcggatctcctgagattcgttgaa
gaggaacatattccttatataaatgcttttcagcattttccagaagagatgaaattatat
gggcgtgacaaaggaatctttgctatagagtcttggcctaactatgaagatatctataaa
aaaataattgaagttgccacatttttagatttgccacgttttccagacataactgaagac
tgctatcttcatccaaacatcttgtgtatgaaatacttgatggaagtcaatctccctgat
gaaatgcatgatttaacctgccacgtggtaaaagtgactggaatgggagaagtggatttt
ctaacatttgatcctatagctaaaaagggaaaaactgttaaatatgatgtacaagctgta
gctgtcattgtagtggtattgaaactgctctttttattggatgacaatttagaatggtct
ttgtctaatattgctgagaaatacaatgaaaagaatgaagaagataagccatggtttgat
ttcagaaaatggtaccaagttatgaagacagctgttgatgaaaaaaaacaaaaatgggag
gaagccagggcaaagtatctatggaaaagtgaaaagccactctaccactcagcgattgac
agatcagtggtatataaaagaagggaaatggtcgtgagtctacaaaaacaatttagcaca
ctggttggttcaacaccaactgttgaaaaacaaagcccttcaagttttcagttcagctgg
accgaagagggcagtgatagaacttgtttccatgggcatagcctccagggagtcctgaag
cagaaaggccagtcactgatgaccaagaattccctctattggctgagtactcagaaattc
tgtaaaagctattgtaagcatgtgacaacctacgaagaatcgaatttttctctgagttat
cagtttatactaaatctcttctccttcttgctaagaataaagacctcccttctccatgaa
gaagtgagcttaatagaaaagagactttttaaagcaaaatacagtacaacaaaaaagaaa
tcttcaagatccaggaaagcaagaaaatgttga
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