Phocoena sinus (vaquita): 116764592
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Entry
116764592 CDS
T07759
Symbol
USP39
Name
(RefSeq) U4/U6.U5 tri-snRNP-associated protein 2 isoform X1
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116764592 (USP39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
psiu03041
]
116764592 (USP39)
Spliceosome [BR:
psiu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
116764592 (USP39)
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Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
116764592
NCBI-ProteinID:
XP_032509208
Ensembl:
ENSPSNG00000008572
UniProt:
A0A8C9BL86
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Position
13:76274935..76305116
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AA seq
565 aa
AA seq
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MSGRSKRESRGSTRGKRESESRSGSARVRRERDRERETEAPSSRGSPVRVKREVEPASAR
EALAPVVPAVRVKREREADEDSEPEREVRAKNGRMDSEDRRSRHCPYLDTINRSVLDFDF
EKLCSISLSHINAYACLVCGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFYCLPDNYE
IIDSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNIKANDYANAVL
QALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEML
QAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVTDVFQGSMRIFTKKL
PHPDLPAEEKEQLLHNDEYQETMVESTFMYLTLDLPTAPLYKDEKEQLIIPQVPLFNILA
KFNGITEKEYKTYKENFLKRFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNFPITNVDL
REYLSEEVQAVHKNTTYDLIANIVHDGKPSEGSYRIHVLHHGTGKWYELQDLQVTDILPQ
MITLSEAYIQIWKRRDNDETNQQGA
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgtccggccggtccaagcgggagtctcgtggatccacccgcgggaagcgcgagtccgag
tcgcggagcggctcggctcgtgtcagacgggagcgagatcgggagcgggagacagaggct
ccgagctcccggggcagtccggtgcgcgtgaagcgggaagtcgagccggcgagcgcgcgc
gaggccctggcgcccgtggtcccggcggtgcgggtgaagcgggagcgcgaggccgacgag
gactcggagcctgagcgggaggtgcgagcaaagaatggccgcatggattctgaggatcgg
aggagccgccactgcccctacctggacaccattaacaggagtgtgctggactttgacttt
gagaaactgtgttccatctccctctcgcatatcaatgcgtatgcctgtctggtgtgtggc
aagtactttcagggccggggtttgaagtctcatgcctacattcacagtgtccagtttagt
caccatgtcttcctcaacctccacaccctcaagttttactgcctcccagacaactatgag
atcatcgattcctcgctggaggatatcacgtatgtgttgaagcccactttcacaaagcag
cagatcgctaacttggacaagcaagccaagttgtcccgggcatatgacggcaccacttac
ctgcccggtatcgtgggcctgaataacataaaggccaacgactacgccaatgccgtcctt
caggctctgtctaacgttcctcctctccgaaactacttcctggaagaagacaattataag
aacatcaagcgtcctcctggggatatcatgttcctgttggtccagcgttttggagagctg
atgagaaagctctggaaccctcgaaatttcaaggcacatgtgtctccccatgagatgctt
caagctgtcgtcctttgcagcaagaagacttttcagatcaccaagcaaggggatggagtc
gactttctctcctggtttttgaatgctctacactcagctctggggggcacaaagaagaaa
aaaaagactattgtgactgatgttttccaggggtccatgaggatcttcactaaaaagctt
cctcatcctgatttgccagcagaagaaaaagagcagctgctccataatgatgagtaccaa
gagacgatggtggagtccacgtttatgtacctgacgctggaccttcctactgcccccctc
tacaaggacgagaaggagcagctcattatcccccaggtgccgctcttcaacatcttggcc
aagttcaacggcatcactgagaaggaatataagacttacaaggagaactttctgaagcgc
ttccagctcaccaaactgcctccatatttaatcttttgtattaagagattcactaagaac
aatttctttgtggagaagaatccgactattgtcaacttccctattacaaatgtggatctg
agagagtacttgtctgaagaagtacaggcggtgcacaagaataccacctacgacctcatc
gccaacattgtacacgacggcaagccctctgagggctcctaccggattcatgtgcttcat
catgggacaggcaaatggtatgaattacaagacctccaggtgactgacatccttccccag
atgatcactctgtcggaggcttacattcagatttggaagaggcgagataacgatgaaacc
aaccagcagggggcttga
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