Phocoena sinus (vaquita): 116764988
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Entry
116764988 CDS
T07759
Symbol
COL8A2
Name
(RefSeq) collagen alpha-2(VIII) chain isoform X1
KO
K23455
collagen type VIII alpha
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
116764988 (COL8A2)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
C1q
BclA_C
Motif
Other DBs
NCBI-GeneID:
116764988
NCBI-ProteinID:
XP_032509928
Ensembl:
ENSPSNG00000016120
UniProt:
A0A8C9CFU4
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Position
1:complement(29163813..29185704)
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AA seq
706 aa
AA seq
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MRGALTSLSSLPPPLLLLLLLVLGCGLRAAASGGAAGAAGYPPVQYVQPMHKGPVGPPFR
EGKGQYLEMPLPLLPMDLKGEPGPPGKPGPRGPPGPPGFPGKPGTGKPGLHGQPGPAGPP
GFSRMGKAGPPGLPGKVGPPGQPGLRGEPGIRGDQGLRGPPGPPGLPGPSGIAVPGKPGP
QGVPGPPGFGGEPGPQGEPGPPGDRGLKGENGVGQPGLPGAPGQGGAPGPPGLPGPAGLG
KPGLDGFPGAPGDKGESGPPGLPGPRGEPGALGPKGPPGLDGMGVPGSAGVPGPQGPPGA
KGEPGTRGPPGLIGPTGYGIPGLPGPKGDRGPAGVPGLLGDRGEPGEDGEQGEQGPQGLG
GPPGLPGSAGLPGRRGPPGPKGETGPGGPPGVPGIRGDQGPSGLAGKPGLPGERGLPGAH
GPPGPTGPKGEPGFTGRPGGPGVAGALGQKGDLGLPGQPGLRGPSGIPGLQGPSGPIGPQ
GLPGLKGEPGLPGAPGEGKVGEPGMAGPTGPPGVPGSPGLTGPPGPPGPPGPPGAPGAFD
ETGIAGLHLPNGGVQGAVLGKGTKPRFGLGELSAHATPAFTAVLTSPFPASGMPVKFDRT
LYNGHSGYNPATGIFTCPVGGVYYFAYHVHVKGTNVWVALYKNNVPATYTYDEYKKGYLD
QASGGAVLQLRPNDQVWVQMPSDQANGLYSTEYIHSSFSGFLLCPT
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgcggggggctctgacgtccctgtcttcgctgccgccacctctgctgctgctgctgctg
ctggtgctggggtgcgggctgagggcggccgccagcggtggagccgccggggcagcgggc
tacccgccggtgcagtacgtgcagcccatgcacaaaggacccgtggggccgcccttccgc
gagggcaagggccaatacctggaaatgcctctaccgctgttgccaatggacctgaaagga
gagcctggtcccccaggaaaacccggaccgcggggtccccctggccctcctggcttccca
ggaaaaccaggcactggaaaaccagggctacatgggcagcctggacccgctggcccccct
ggcttctcccggatgggcaaggctggtcccccagggcttccaggcaaggttggcccacca
gggcagccggggcttcggggggagccagggatacgaggggaccagggcctccgggggccc
ccagggccccctggcctacctgggccctcaggcattgctgtccctggaaaaccaggtccc
cagggggtgccagggcccccaggatttgggggggagccagggccccagggagagcctggg
cccccgggtgatcgaggcctcaagggtgaaaatggagtgggccaaccagggcttcctgga
gccccaggccaggggggtgcccccggaccccctggtctccctggtccagctggcttgggc
aaaccaggtttggatgggtttcctggggcccctggagataagggtgagtctgggcctcct
gggctgccaggacccaggggggagccaggagctttgggccccaaagggccccctgggctg
gatggtatgggggtaccagggtcagcaggggtgccagggccacagggcccaccaggggcc
aaaggggagccaggcacccggggccctcctggcctgataggccccactggctatgggata
ccagggctgccaggtcccaagggggacaggggcccagctggggtcccggggctcttgggg
gacaggggcgagccaggtgaggatggggagcagggggaacaggggccacagggccttggg
ggcccccctggacttccggggtctgcagggctacctggccgacgtgggcccccggggcct
aagggggagacggggcctggaggacccccaggagtgcctggcattcggggtgaccagggg
cctagtggcctggctgggaaacctgggctcccaggagagagggggcttccaggggctcat
ggacctcctggaccgactgggcccaaaggcgagccaggtttcacgggccgccctggagga
ccaggggtggcaggagccctggggcagaagggtgacttggggctccctgggcagcctggc
ctgagaggcccttctggaatcccaggactccaaggtccgtctggccctattgggccgcag
ggtctgccaggcctgaagggtgaaccaggcctgccgggggcccctggagaggggaaagtg
ggagaacctggcatggctgggcctacagggcctcctggggtcccaggttccccaggactc
acgggccctcctgggcctcccggacctcccgggccccctggtgcacccggggccttcgat
gagactggcatcgctggcctgcacctgcccaacggcggcgtgcagggagctgtgctgggc
aaggggaccaagccccggtttgggctgggcgagctgtcggcccatgccacgcccgccttc
accgctgtgctcacctcacccttccccgcctcaggcatgcctgtgaagtttgaccggacc
ctctacaatggccacagtggctacaacccagccaccggcatcttcacctgccccgtgggc
ggggtctactactttgcttaccacgtgcacgtcaagggcaccaatgtgtgggtggccctg
tacaagaacaacgtgccagccacctacacctatgacgagtacaagaagggctacctggac
caggcgtctgggggggccgtgctccagctgcggcccaacgaccaggtctgggtgcagatg
ccctcggaccaggccaatggcctctactccaccgagtacatccactcctccttttcagga
ttcttgctgtgccccacataa
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