Pseudomonas silvicola: LZ023_06445
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Entry
LZ023_06445 CDS
T10729
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
psiv Pseudomonas silvicola
Pathway
psiv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psiv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LZ023_06445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psiv03019
]
LZ023_06445
Enzymes [BR:
psiv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LZ023_06445
Messenger RNA biogenesis [BR:
psiv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LZ023_06445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
DUF2730
Motif
Other DBs
NCBI-ProteinID:
WAH59192
LinkDB
All DBs
Position
complement(1378984..1380897)
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AA seq
637 aa
AA seq
DB search
MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKIYARDLKFVSTCIFGGVGMN
PQVQAMARGVDVLVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVYRLPAAHKRSLL
AHLITLGAWEQVLVFTRTKHGANRLAEYLEKHGLSAVAIHGNKSQNARTKALADFKAGAV
RIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIPDGDLMGFDINAVEAEKPEVRERPQANAPRNARGPRGDGANASNGAGR
KDKGKDKGREKAKEQGKEQGKEKPAGARSERQPRDQKPRQAQSTPKPPVAPADRAPDEFL
DDEVDNFGNRADYVSPYQNKNQGRNRRPGAPAPAGGAAPASGPRPARQGTPRNTPAAGKP
AGDKRNGPRSNGGGARDGQPRRDNNGGGRNRRPARDEQPRQEPAVSNSRAPQNQPRIVHK
ESKIDRFPTAEQLEQLESLPSRRNGEKPALLTRNREG
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtccgcgccatcgaggcggcgggc
tatacccagcctactccggtgcaacagcgggctattcccgccgtgttgcaaggtcgtgac
ctgatggtcgcggcacagacaggtacaggtaaaaccggtggtttcgcccttccgatcctg
gaacggctgtttcccaacggtcacccggacaaatcccagcgtcatggcccgcgccaaccg
cgcgtgctggtgctgacccccactcgcgagctggcggcccaggtgcatgacagcttcaag
atctatgctcgcgacctgaagttcgtcagcacctgcatcttcggcggcgtcggcatgaac
ccacaggtgcaggccatggcccgcggcgtcgacgttctggtggcctgccccggccgcctg
ctcgacctgtgcggccagggcagcgtcgacctctcccacgtggaaatcctcgtgctggac
gaagccgaccgcatgctcgacatgggcttcgtccatgacgtcaagaaagtgctggcacgc
ctgccggccaagcgccagaacctgctgttctcggccactttctccaaggacatcaccgac
cttgccggcaagctgctgcacaacccagagcgcatcgaagtcacgccgcccaacaccacg
gtggagcgcatcgagcaacgggtctaccgcctgcctgccgcccacaagcgttcactgctg
gctcacctgatcaccctgggtgcctgggaacaggtactggtgttcacgcgcaccaagcat
ggcgccaaccgcctggccgagtacctggaaaagcacggcctgagcgccgttgccatccac
ggcaacaagagccagaacgcccgcaccaaagccctggccgacttcaaggccggtgccgtg
cgcatcatggtcgccaccgacatcgctgcccgcggcctggacatcgaccagttgccgcac
gtggtgaacttcgagctgcccaacgtcgatgaagactacgtgcaccgtatcggccgtacc
ggccgggccggtcgcagcggcgaggctatctcgctggtcgccccggacgaggaaaagctg
ctcaagagcattgagcgcatgaccaagcagaaaatccctgacggcgacctgatgggcttc
gacatcaatgccgtggaggccgagaagcccgaggtgcgcgagcgcccgcaggccaacgcc
ccgcgcaacgcccgtggcccgcgtggtgacggtgccaacgccagcaacggtgctggccgc
aaggacaaaggcaaggacaagggccgcgagaaggccaaggaacaaggtaaggagcaaggc
aaggaaaagcccgccggggcgcgttctgaacgccaaccccgtgaccagaagccgcgtcag
gcccagtccactccaaagccgccggtagctcctgccgaccgcgcgccggacgagttcctg
gatgacgaagtggacaactttggtaaccgtgccgactacgtcagcccttaccagaacaag
aaccagggccgtaaccgccgcccaggtgctccggcaccagcaggcggcgcggctccggct
tcggggccgcgcccggcccgccagggcacgccgcgcaacacgccagccgctggcaaaccg
gccggtgacaagcgtaacggcccgcgcagcaatggtggtggcgcccgtgacggccagcca
cgccgcgacaacaatggcggcggccgcaaccgtcgaccggcccgtgacgagcaacctcgt
caggaaccggccgtgagcaactcgcgcgcaccgcagaaccagccgcgcatcgtgcacaag
gaatcgaagatcgatcgcttcccgactgccgagcagctggaacagctggagtcgctgccg
agccgccgcaacggtgaaaagccagcgctgctgacgcgtaaccgcgaaggttga
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