Pseudomonas silvicola: LZ023_08345
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Entry
LZ023_08345 CDS
T10729
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
psiv Pseudomonas silvicola
Pathway
psiv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psiv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LZ023_08345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psiv03019
]
LZ023_08345
Enzymes [BR:
psiv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LZ023_08345
Messenger RNA biogenesis [BR:
psiv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LZ023_08345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WAH59542
LinkDB
All DBs
Position
1789067..1790404
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AA seq
445 aa
AA seq
DB search
MTFATLGLIEPLLRALETLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPML
QRLTMEGPKVASNCVRALVLVPTRELAEQVHASIREYGEHVPLSTYAVYGGVSINPQMMK
LRKGIDLLVATPGRLLDLYRQNAVKFNQLETLVLDEADRMLDLGFAEELRDIYAALPKKR
QTLLFSATFSDDIRLLAGQMLDNPLSIEVSPRNVAASTVKQWIVTVDKKRKPELFIHLMK
RLKWKQTLVFAKTRNGVDALVERLQGLGINADGIHGDKPQATRQRALDRFKANEVQILVA
TDVAARGLDIDDLPTVVNFDLPIVAEDYVHRIGRTGRAGQTGEAISLVCADEVQLLSAIE
VLTRQTLKRQEESGFEPDHRVPETNASGDVLKKPKKPKKPKVSGGKRTLGKWMDSGDTPT
ENIAPAAKPVRKVPAFNTGPRKRKP
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgacattcgccacccttggcctgattgaacccctgttgcgcgccctggaaacccttggc
taccagaccccgacgccggtacaggcccaggccattccagcggtgctggccggccgtgac
ctgatggccgccgcccagaccggcaccggtaagaccgccggcttcgcgctgcccatgctg
cagcgcctgaccatggaaggcccgaaagtggccagcaactgcgtgcgcgcgctggtgctg
gtgccgacccgggaactggccgaacaggtgcacgccagcattcgtgaatacggtgagcat
gtgccgctgagcacctatgcggtgtacggtggcgtcagcatcaacccgcagatgatgaag
ctgcgcaagggcatcgacctgctggtggccaccccgggccgcctgctggacctttatcgt
cagaacgcggtgaaattcaaccagctggaaaccctagtgctggacgaggccgaccgcatg
ctcgacctcggtttcgccgaagaactgcgcgatatctacgccgcattgccgaaaaagcgc
cagacgctgctgttttcggccacgttctccgacgacatccgcctgctggccgggcagatg
ctcgacaacccgttgagcatcgaagtcagcccgcgcaacgtagcggcttccaccgtgaag
cagtggatcgtcacggtggacaagaagcgcaagccagagctgttcatccacttgatgaaa
cgcctgaagtggaagcagaccctggtcttcgccaagacccgcaacggtgtcgacgcgctg
gtcgagcgcctgcagggcctgggcatcaacgccgacggcatccacggcgacaagccccag
gccacgcgccagcgtgccctggaccgcttcaaggccaatgaagtgcagatcctggtggcc
actgacgtggccgcccgcggcctggacatcgacgacctgcccaccgtggtcaacttcgac
ctgcccatcgttgccgaagactacgtgcaccgcatcggccgcacgggccgggcgggccag
accggcgaggcgatttcgctggtgtgcgccgacgaagtgcaactgctgtcggccatcgaa
gtgctgacccgccagaccctcaagcgccaggaagaatcgggtttcgaacccgaccatcgc
gttccggaaaccaatgccagcggcgacgtgctgaaaaaaccgaaaaagccgaagaaaccc
aaggtcagtggcggcaagcgcaccctgggcaaatggatggacagcggcgacacgcccacc
gaaaacattgccccggccgccaagcccgtgcgcaaggtgccggccttcaacaccggccca
cgcaagcgcaagccttaa
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