Pseudomonas silvicola: LZ023_08905
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Entry
LZ023_08905 CDS
T10729
Name
(GenBank) sigma-54 dependent transcriptional regulator
KO
K02667
two-component system, NtrC family, response regulator PilR
Organism
psiv Pseudomonas silvicola
Pathway
psiv02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
psiv00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LZ023_08905
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
psiv02022
]
LZ023_08905
02035 Bacterial motility proteins [BR:
psiv02035
]
LZ023_08905
Two-component system [BR:
psiv02022
]
NtrC family
PilS-PilR (type 4 fimbriae synthesis)
LZ023_08905
Bacterial motility proteins [BR:
psiv02035
]
Pilus system
Twitching motility proteins
LZ023_08905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
Sigma54_activ_2
AAA_lid_14
HTH_8
AAA_5
Pre_tape_measure
HTH_30
HTH_50
Mg_chelatase
AAA_16
AAA
AAA_22
VpsR
Motif
Other DBs
NCBI-ProteinID:
WAH59649
LinkDB
All DBs
Position
complement(1912704..1914044)
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AA seq
446 aa
AA seq
DB search
MSQRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVKEARDCLAREPFDLCLTDMRLPD
GTGLELVQHIQQRYPQVPVAMITAYGSLDTAINALKAGAFDFLTKPVDLTRLRELVGSAL
RLQGQAAEQPSIDDRLLGDSPPMLAMRKQIMRLARSQAPVYISGESGSGKELVARLIHEQ
GPRAELPFVPVNCGAIPSELMESEFFGHRKGSFTGAMEDKPGLFQAAQGGTLFLDEVADL
PLAMQVKLLRAIQEKAIRSVGGQSEVVVDVRILCATHKDLAAEVAAGRFRQDLYYRLNVI
ELRVPSLRERREDIALLANKVLKRLAHGSGLPPAQLSATALETLKAYRFPGNVRELENML
ERAYTLCENERIEASDLRLSDTAPVAEAGVPDLTNVDNLEDFLENIERKLILQALEETRW
NRTAAAQRLSLSFRSMRYRLKKLGLE
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgagccaacggcagaagatcctgatcgtcgacgatgagccggacatccgcgaactcctg
gaaatcaccctgggccggatgaagctcgacacccgcagcgcgcgcaacgtcaaggaggcc
cgcgactgcctggcccgcgaacccttcgacctgtgcctgaccgacatgcgcctgcccgac
ggcacggggctggagctggtgcagcatatccagcagcgctacccccaggtgccggtggcc
atgatcaccgcctacgggagcctcgacaccgccatcaatgccctcaaggccggcgccttc
gacttcctgaccaaaccggtggacctcacccggctgcgtgaactggtgggcagcgccctg
cgcctgcaaggccaggccgccgagcagccgagcatcgacgaccgactgctgggcgactcg
ccgcccatgctggccatgcgcaaacagatcatgcgcctggcgcgcagccaggcgccggtg
tacatcagcggcgaatcgggcagcggcaaagaactggtggcccggctgatccacgaacag
ggcccacgcgccgaactgcctttcgtaccggtgaactgtggcgccattccttcggagctg
atggaaagcgaattcttcggccaccgcaaaggcagcttcaccggcgccatggaagacaag
cccgggctgttccaggcggcccagggcggcacgctgttcctcgatgaagtggccgacctg
cccttggccatgcaggtcaagctgctgcgcgcgattcaggaaaaggccattcgcagcgtc
ggtggccagagcgaggtagtggtggacgtgcgcatcctgtgcgctacccacaaggacctg
gccgccgaagtcgcggccgggcgcttccggcaggacctgtattatcggctcaacgtcatc
gaactgcgcgtgccatcactgcgcgaacgccgcgaagacatcgccctgctggccaacaaa
gtgctcaagcgcctggcccacggcagcggcctgccgcccgcgcaactcagcgccacggcg
ctggaaaccctcaaggcctaccgtttccccggcaacgtgcgcgaactggagaacatgctc
gaacgtgcgtacaccttgtgcgaaaatgagcgcatcgaggccagcgacctgcgcctgagc
gacaccgcgccagtggccgaggccggtgtgccggacctgaccaacgtggacaacctggaa
gacttcctggagaacatcgagcgcaagctgatcctccaggcactggaagaaacccgctgg
aaccgcaccgcggcggcgcagcgcctgagcctgtcgttcaggtcgatgcgctaccgcctg
aaaaaactggggctggagtag
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