Pseudomonas silvicola: LZ023_10050
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Entry
LZ023_10050 CDS
T10729
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
psiv Pseudomonas silvicola
Pathway
psiv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psiv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
LZ023_10050 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psiv03400
]
LZ023_10050 (sbcB)
Enzymes [BR:
psiv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
LZ023_10050 (sbcB)
DNA repair and recombination proteins [BR:
psiv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
LZ023_10050 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LZ023_10050 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LZ023_10050 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
WAH59847
LinkDB
All DBs
Position
2151058..2152488
Genome browser
AA seq
476 aa
AA seq
DB search
MTSSIFWYDYETTGINPRNDRALQVAGIRTDANLNEIEEPINLYCQPSDDILPHPAACVI
TGITPQRLAERGLCEAEFMTRVNAQMARPETCSAGYNTLRFDDEVTRYSLYRNFFDPYAR
EWQGGNSRWDLIDVVRAAYALRPDGIVWPHVDGRVSMKLELLTAANGIDHGQAHDALSDV
RATIALARLIRERQPKLYNWLYQARSKQKVMDQIRLLQPLVHISGRFSAERNYLGVVLPL
AWHPRNRNALIVCDLHGDPQPLLDENAEVLRQRLYCRRDELPDGQLPVPLKLIHVNRCPV
LAPLGVVRDEDRERLQLDMNLYRQRAEQLSQAQHVWQDKLPLLYAEEAFAEVSDPEQQLY
GGFIGDRDRRLCEQVRTLDPQQLATQTWMFDDERLPELLFRYRARNFPDTLNAEERAAWL
HFCQQRLTDEAWGAPNTLAGFAEALLPWQANATPAQLQVLAQWQAHVEQLRQRLGI
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
gtgacttccagcatcttctggtacgactacgaaaccaccggcatcaacccgcgcaatgac
cgggccttgcaggtcgccggtattcgcaccgatgccaacctcaatgaaatcgaagaaccc
atcaacctgtattgccagcccagcgacgatatcctgccgcacccggcagcgtgcgtgatc
actggtataaccccccagcgcctggcggaacgtggcctgtgcgaggccgaattcatgacg
cgggtaaacgcccagatggcgcgtcccgaaacatgcagcgccgggtataacaccctgcgc
tttgacgacgaagtcacgcgctacagcctgtatcgcaactttttcgacccctatgcccgg
gaatggcagggtggcaacagccgctgggacctgatcgacgtggtccgtgccgcctatgcc
ctgcgccctgatggcattgtctggccgcacgtggatggccgggtcagcatgaagcttgag
ttgttgacggcggccaacggcattgatcacggccaggcccacgatgcactgtctgatgtg
cgtgccaccattgcccttgcacggctgattcgtgaacgccagcccaaactgtataactgg
ttataccaggcacgcagcaagcaaaaagtaatggatcagatccgcttattgcagccgctg
gtgcatatctccgggcgcttttctgccgaacgcaattacctgggtgtggtattgccattg
gcctggcacccgcgtaatcgaaacgcactgattgtgtgcgacctgcatggcgaccctcag
cccctgctggacgaaaatgcagaagtgttgcgtcagcgtttgtattgccgtcgtgatgag
ttgcccgatgggcaattaccggtgccattgaagctgattcacgtcaaccgctgtccggtg
ctcgcaccgcttggcgtagtccgtgatgaggatcgcgaacgtttacagttggacatgaat
ctttatcggcagcgggcggagcagctgagccaggcgcagcatgtatggcaggataaattg
cctttgctctacgctgaggaggcctttgccgaggtgagtgaccctgaacaacagttatac
ggcggctttatcggcgaccgtgatcgtcggttgtgtgagcaggttcgcactctggaccca
caacagttggccacgcagacgtggatgttcgatgacgagcgtttgcctgagttattgttt
cgctatcgcgcacgtaactttccggatacgttgaacgctgaggagcgcgcagcctggctg
cacttctgccagcaacgcctgacggacgaggcgtggggggcgccgaatacactggccggt
ttcgccgaggcattgttgccctggcaggccaacgcgacgcctgcgcagctgcaagtactg
gcacagtggcaggcccatgtggagcaactgcgccagcggttgggtatataa
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