KEGG   Pseudomonas silvicola: LZ023_11395
Entry
LZ023_11395       CDS       T10729                                 
Name
(GenBank) ligase-associated DNA damage response DEXH box helicase
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
psiv  Pseudomonas silvicola
Brite
KEGG Orthology (KO) [BR:psiv00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:psiv03400]
    LZ023_11395
Enzymes [BR:psiv01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     LZ023_11395
    5.6.2.6  RNA 3'-5' helicase
     LZ023_11395
DNA repair and recombination proteins [BR:psiv03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    LZ023_11395
SSDB
Motif
Pfam: WHD_Lhr DEAD_assoc DEAD Helicase_C ResIII Cas3-like_C_2
Other DBs
NCBI-ProteinID: WAH60105
LinkDB
Position
complement(2435511..2437949)
AA seq 812 aa
MPDHARHWFADRHWKPFAFQKQVWTAVKAGQSGLLHASTGAGKTYALWFAALQRFAKAGS
RTAPLTVLWITPMRALAADTQRALQTPLDDLQLPWSLGLRTGDTSSAERARQGRRLPTTL
ITTPESLTLLLAREQARTEFASLRMVVVDEWHELIGNKRGVQLQLALARLRRWQPGLIVW
GISATLGNQAHAQEVLLGPGEGISVQGADAKRIEVDTLLPGAIERFPWGGHMGLRMLDQV
VAEIDASSSCLVFTNTRAQAEIWFQSILDARPDWAGIIALHHSSLARETRDWVERALKQG
ELKAVVCTSSLDLGVDFLPVERVLQIGSAKGVARLMQRAGRSGHAPGRASRVTLVPTHSL
ELVEAAAAEQAVADRQIEPRESPYKPLDVLVQHLVTMALGGGFLPEQLLAEVRSAWAYRD
LTDDEWHWALAFVRHGGHSLTAYPDYRRVEPDEHGVWRAPDARLARRHRMSIGTIVSDAS
LQLKFWSKGGGGRSLGSVEEGFIARLRPGDGFLFAGRQLELVRVENMTAYVKRSTAKKAA
VPRWNGGRMPLSSELADALVVQLGLAAQGEYHSAPMRAVRPLLEVQQHWSALPTPATLLA
ETLKSREGWHLFLYPFAGRQVHLGLASLLASRMSRQQPLTFSMAVNDYGFELLSATAVDW
SQWLDGALLSPDHLLADVVASLNAGELAQRRFREIARISGLVFGGYPGSQKSTRQVQASS
SLFFEVFKQYDAGNLLLTQAQEEVLRQELDVQRLAQTLTRIQGLRLDLHALKRATPLAFP
LLVERFRESLSSEKLADRIARMVGELERAADQ
NT seq 2439 nt   +upstreamnt  +downstreamnt
atgcccgatcacgcccgccactggttcgccgaccgacactggaaacccttcgctttccag
aaacaggtctggacagcggtgaaagcgggacagtccggcctgctgcatgccagtaccggc
gccggcaagacttacgcactgtggttcgcggccttgcagcggttcgccaaggccggcagc
cgcaccgcaccactgacggtgctgtggatcacgcccatgcgcgcactggcggccgacacc
caacgcgccctgcaaacgcccctggacgacctgcaactgccctggagcctgggccttcgc
accggcgataccagcagcgccgaacgcgcgcgacagggccggcgcctgccgaccacgctg
atcaccaccccggaaagcctgaccctgctgctggcccgtgagcaggcccgtaccgaattc
gccagcctgcgcatggtggtggtggacgagtggcacgaactgatcggcaacaagcgcggc
gtgcaactgcaactggccctggcgcgtctgcgccgctggcaacctggcctgatcgtgtgg
ggtatttccgccacccttggcaaccaggcccacgcccaggaagtcctgttgggcccgggc
gaaggtatcagcgtgcagggcgccgacgccaagcgcatcgaggtcgacaccttgttgccc
ggcgccatcgagcgcttcccctggggtggccacatgggcctgcgcatgctcgaccaggtg
gtggccgaaattgacgccagcagcagttgcctggtgttcaccaacacccgcgcccaggcg
gaaatctggtttcagtcgattctggacgcccgccccgattgggccggcatcatcgccttg
caccatagttcgctggcgcgcgaaacccgcgactgggttgagcgggcactcaagcaaggc
gaactcaaggccgtggtctgcacctccagcctcgacctgggcgtggactttctgccggtg
gagcgcgtgctgcagatcggctcggccaagggcgtggcgcggctgatgcagcgcgccggc
cgctcgggccacgcgcccggtcgcgcctcgcgggtcaccttggtgcccacgcacagcctg
gaactggtggaagcggccgccgccgagcaggccgtggccgaccgtcagatcgaaccgcgt
gaatcaccctacaaaccgctggacgtgctggtacagcacctggtgaccatggccctgggg
ggcggcttcttgcctgagcaactgctggccgaggtacgcagcgcctgggcctaccgcgac
ctgaccgatgacgagtggcactgggccctggcgttcgtccgccatggcggccactcgctg
accgcctaccctgactaccgccgcgtggagcctgacgaacacggcgtgtggcgggcgccc
gacgcccggctggcgcgccgccaccgcatgagtatcggcaccatcgtcagcgacgccagc
ctgcaactcaagttctggagcaagggcggaggcggccgctccctgggcagtgtcgaagaa
ggcttcatcgcccgcctgcgccccggcgacggcttcctgttcgccggccggcaactggag
ttggtgcgggtagaaaacatgaccgcctacgtcaagcgcagcaccgcgaaaaaagccgcc
gtgccgcgctggaatggcgggcgcatgcccctgtccagcgaactggccgatgccctggtg
gtgcaactgggcctcgctgcccagggcgagtaccacagcgcgcccatgcgggccgtgcgc
ccgctgctggaagtgcagcaacactggtctgcattgccgacccccgccaccttgctggct
gaaaccctgaagtcgcgggaaggctggcacctgttcctctaccccttcgccgggcgccag
gtgcaccttggcctggccagcctgctggcctcacgcatgagccgccagcagccgctgacc
ttctccatggcggtcaatgactacggcttcgaactgctcagcgccacggccgttgattgg
tcgcagtggctcgatggcgccctgctcagcccggaccacttgctggcagacgtggtggcc
agcctcaacgccggtgaactggcgcaacgacgttttcgggagatcgcgcgcatttccggc
ctggtcttcggcggttaccctggttcgcagaaaagcacccgacaggtacaggcgtccagc
agcctgttcttcgaggtcttcaagcaatacgacgccggcaacctgctgttgactcaggct
caggaagaggtgctgcgccaggagctggatgtgcagcgcctggcccagacactcacccgc
atccagggcctgcgcttggacctgcacgcactcaagcgggcgaccccgctggcgtttcca
ctgctggtagagcgctttcgggaaagcctgagctccgaaaaactcgccgaccgaatcgcg
cgcatggtcggtgagctcgaacgggcggccgaccaatga

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