Pseudomonas silvicola: LZ023_11775
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Entry
LZ023_11775 CDS
T10729
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
psiv Pseudomonas silvicola
Pathway
psiv03030
DNA replication
psiv03430
Mismatch repair
psiv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psiv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LZ023_11775 (dnaE)
03430 Mismatch repair
LZ023_11775 (dnaE)
03440 Homologous recombination
LZ023_11775 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psiv03032
]
LZ023_11775 (dnaE)
03400 DNA repair and recombination proteins [BR:
psiv03400
]
LZ023_11775 (dnaE)
Enzymes [BR:
psiv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LZ023_11775 (dnaE)
DNA replication proteins [BR:
psiv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LZ023_11775 (dnaE)
DNA repair and recombination proteins [BR:
psiv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LZ023_11775 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
WAH60167
LinkDB
All DBs
Position
2519468..2522989
Genome browser
AA seq
1173 aa
AA seq
DB search
MSVSFVHLRLHTEYSLVDGLVRIKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKTAMGGG
IKPICGADLWLANKDADGPLSRISLLAMNAQGYRNITELISRGFIDGQRNGQVIIEREWV
AEASEGVICLSAAKEGEIGLSLLGGNPQDAEALLQEWMSVFPGRFYVEIQRTNRTNDEEY
LHAAVALADKCGAPLVATNDVRFIRQEDFEAHETRVCIGEGRALDDPRRNKNYSDQQYLK
SAEEMHALFSDLPEALENTVEIAKRCNIDVKLGKHFLPDYPIPDGMTIDEYFRKVSFDGL
EERLSVLLPRDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVPV
GPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDYV
AEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQE
EILRDFLKTDEEAAEIWEMARKLEGITRNVGKHAGGVVIAPTKLTDFSPIYCDEEGDGLV
TQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVGEEPLDIAFIPLDDKPTYS
LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR
AELAYPHPDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE
EMAKQRGGFIEGCANNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHY
PAPFMAAVLSADMHNTDKVVTLIEEVRIMKLRLDAPDVNASEFKFTVNDEGRIIYGLGAI
KGVGEGPVEAITEARQAGPFKDLFDFCERIDLKRVNKRTLDGLIRSGALDRLGPYFHDES
KAYLANIDRNRAVLLAAMEEAIKAAEQTARTHDSGHSDLFGGLFVEADADVYASHRKAKE
LTLKERLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARGAQTVAGMVINLRVM
KNKKGDKMGFITLDDRSARIEASLFADAFMAAQSLLQTDAMVVVEGEVSNDDFSGGLRLR
VNRVMTMEDARTNLAESLRLKVHADALKGDRLSWLGDLCKRHRGACPITMEYTGPDAKAL
LQFGEDYRIDPGDGLIQALRDQFGRENVFLQYR
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtttctttcgttcatcttcgcctgcacaccgaatattccctggtcgatggcctg
gtgcgcatcaagcccctgatcaaggccctgaccggtatgaacatgccggcggtggcggtc
accgaccagaacaacatgtgctcgctggtcaagttctacaagacggccatgggcggcggc
atcaagccgatctgcggtgccgacctgtggctggccaacaaggatgccgacggcccgctg
agccgcatcagcctcttggccatgaacgcccagggctaccgcaatatcaccgagctgatc
tcccgcggtttcatcgatggccagcgcaatggccaggtgatcatcgagcgcgagtgggtg
gccgaggccagcgagggcgtcatctgcctgtccgcggccaaggaaggtgagatcggcctg
tcgctactgggcggcaacccccaggacgccgaggcgctgctgcaggaatggatgtcggtg
ttccccggccgcttctacgtggaaatccagcgtaccaaccgcaccaacgacgaagaatac
ctgcacgccgccgtggccctggccgacaagtgcggcgcaccgctggtggccaccaacgac
gtgcgcttcatccgccaggaagacttcgaggcccacgagacccgcgtgtgcatcggtgaa
ggccgggcgctggacgacccgcgccgcaacaagaactacagcgaccagcagtacctgaaa
agcgccgaggaaatgcacgcgctgttcagcgacctgcccgaggcgctggaaaacaccgtc
gagatcgccaagcgctgcaacatcgacgtcaagctgggcaagcacttcctgcccgactac
ccgattcccgatggcatgaccatcgacgagtacttccgcaaggtctcgttcgacggcctg
gaggagcgtctgtcggtgctgctgccacgcgataccaccgaagactacgaagccaagcgc
caggtctacgtggaccggttgaatttcgagctggatatcatcatccagatgggcttcccc
ggttacttcctgatcgtgatggacttcatccagtgggccaagaacaacggtgtgccggta
ggtccgggccggggttcgggtgctggctcgctggtggcctacgtgcagaagatcaccgac
ctcgacccgctggaatacgacctgctgttcgaacgtttcctcaacccggaacgggtttcc
atgcccgacttcgacgtcgacttctgcatggacggccgcgaccgggtcattgattacgtg
gccgagaaatacggccgcaacgccgtgagccagatcatcaccttcggttccatggccgcc
aaggcggtggtgcgtgacgtggcgcgggtgcagggcaagtcctacggactggccgaccgc
ctgtcgaagatgatcccgttcgaagtgggcatgaccctggaaaaggcctacgagcaggaa
gaaatcctgcgcgatttcctcaagaccgacgaggaagcggccgagatctgggaaatggcc
cgcaagctcgagggcatcacccgtaacgtcggcaagcacgccggtggcgtggtgatcgcg
cccaccaagctgaccgacttctcgcccatttattgcgacgaggaaggtgacggcctggtg
acccagttcgacaaggacgatgtggaggcggccggcctggtgaagttcgacttcctcggc
ctgcgtaccctgaccatcatcgactgggccctgaagaccatcaaccgcgaccgcgccaag
gtgggcgaggagccgttggacatcgccttcattccgctggacgacaagccgacctacagc
ctgctgcaaaaggccgagaccacggcggtgttccagcttgaatcgcggggcatgaaggag
ctgatcaaaaagctcaagcctgactgcctggaagacctgatcgcactggtggcgctgttc
cgcccaggcccgctgcaatcgggcatggtggacgacttcatcaaccgcaagcacggtcgt
gccgaactggcctacccgcacccggactaccagtacgaaggcctcaagccagtactggca
cccacctacggcatcatcctgtaccaggaacaggtgatgcagattgcccaggtgatggcg
ggttacaccctgggcggcgcggacatgctgcgccgggccatgggcaagaaaaagcccgag
gaaatggccaagcagcgcggcggcttcatcgaagggtgcgccaacaataacattgacgcc
gacctggccggcaacatcttcgacctggtggaaaagttcgccggctacggcttcaacaaa
tcccactccgccgcctacggcctggtgtcgtaccagaccgcctggctgaaggctcactac
ccggcgccgttcatggccgcggtactgtcggccgacatgcacaacaccgacaaggtcgtg
accttgatcgaggaagtgcgcatcatgaagctgcgcctcgacgcgccggatgtgaacgcc
tccgaattcaagttcacggtgaacgacgaaggccgcatcatctatggcctgggtgcgatc
aagggcgtcggcgagggcccggtggaagccatcaccgaggctcgccaggctggccccttc
aaggacctgttcgacttctgcgaacgcatcgacctcaagcgcgtgaacaagcgcaccctg
gacggcttgatccgtagcggtgccctggatcgcctggggccatatttccatgatgagtcc
aaggcctacctggccaacatcgaccgcaaccgagcggtgttgctggcggccatggaagaa
gccatcaaggccgccgagcagaccgcacgcacccatgacagcggccactcggacctgttc
ggcgggttgttcgtggaagcggatgccgacgtctacgccagccaccgcaaggccaaggaa
ctgaccctcaaggaacgcctgcgcggcgaaaaggaaaccctgggcctgtacctgaccggg
cacccgatcgacgaatacgaaggcgagatccgccgcttcgcccgccagcgcatcatcgac
ctcaagccggcgcgcggtgcgcagacggtggcgggcatggtcatcaacctgcgggtgatg
aagaacaagaagggtgacaagatgggcttcatcaccctcgacgaccgctcggcgcgtatc
gaggcgtcgctgttcgccgatgccttcatggccgctcagtcgctgctgcagaccgacgcc
atggtggtggtggaaggggaggtcagcaacgacgacttctccggtggcctgcgcctgcgc
gtcaaccgcgtgatgaccatggaagacgcgcgcaccaacctggccgagagcctgcgcctg
aaggtgcacgcggacgcgctgaagggcgaccgcctgagctggctgggtgacctgtgcaag
cgccaccgcggcgcctgcccgatcaccatggagtacaccggccctgacgccaaggccttg
ctgcagtttggcgaggactaccgcatcgacccgggtgatggtttgattcaagccctgcgt
gaccagttcgggcgtgagaacgtcttcctgcaatatcgttga
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