Pseudomonas silvicola: LZ023_11965
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Entry
LZ023_11965 CDS
T10729
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
psiv Pseudomonas silvicola
Brite
KEGG Orthology (KO) [BR:
psiv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
psiv03009
]
LZ023_11965 (rimO)
Enzymes [BR:
psiv01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
LZ023_11965 (rimO)
Ribosome biogenesis [BR:
psiv03009
]
Prokaryotic type
ribosomal protein modification factors
LZ023_11965 (rimO)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
TRAM_2
UPF0004
TRAM
YajR_YAM
CLP1_P
Motif
Other DBs
NCBI-ProteinID:
WAH60204
LinkDB
All DBs
Position
complement(2556172..2557509)
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AA seq
445 aa
AA seq
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MSTTPAPSAPKVGFVSLGCPKALVDSERILTQLRMEGYEVVPTYQDADVVVVNTCGFIDT
AKAESLEVIGEALAENGKVIVTGCMGVEESAIRNVHPSVLAVTGPQQYEQVVTAVHEVVP
PRQDHNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLSE
AERLVKAGVKELLVISQDTSAYGVDVKYKTDFWNGRPVKTRMLELCEALSSLGVWVRLHY
VYPYPNVDDIIPLMAAGKLLPYLDIPFQHASPKVLKLMKRPAFEDKTLARIKKWREQCPD
LIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANDLDAEVVPDDVK
QDRWDRFMAHQQAISAARLQMKIGKEIEVLIDEVDEQGAVGRCFFDAPEIDGSVFIEGAE
GLNAGDKVMCRVVDADEYDLWAERL
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccactcccgcgccgtccgccccaaaggtaggatttgtgtcactcgggtgcccc
aaggccctagtcgattccgaacgcatcctcacccagctgcgcatggaaggctatgaagtc
gtaccgacctaccaggacgccgacgtcgtggtcgtcaatacctgcggcttcatcgacacc
gccaaggccgagtccctggaagtgatcggcgaagccctggccgaaaacggcaaggtcatc
gtcaccggctgcatgggcgtggaagaaagcgcgatccgcaacgtgcaccccagcgtgctg
gcagtgaccggcccgcagcagtacgagcaggtcgtgaccgccgtgcacgaagtggtaccg
ccgcgccaggaccacaacccgctcatcgacctggtgccgccacagggcatcaagctgacc
ccgcgccattacgcctacctgaagatttccgaaggctgcaaccacagttgcagcttctgc
atcattccgtccatgcgcggcaagctggtcagccgcccggtgggcgacgtgctgagcgag
gccgagcgcctggtcaaggccggcgtgaaagagctcctggtgatttcccaggacaccagt
gcctacggcgtggacgtcaagtacaagaccgacttctggaacggccgcccggtcaagacc
cgcatgctggaactgtgcgaggccttgagcagcctgggcgtgtgggtacgcctgcattac
gtgtacccgtacccgaatgtcgacgacatcatcccgctgatggccgctggcaaactgttg
ccgtacctggacatcccgttccagcacgcaagccccaaagtgctgaagctgatgaaacgc
ccggccttcgaagacaagactctggcgcgcatcaagaaatggcgcgaacagtgcccggac
ctgatcatccgctccaccttcatcgtcggcttcccgggcgaaaccgaggaagacttccag
tacttgctggactggctcaccgaagcccagctggaccgtgtcggctgcttccagtactcg
ccggtcgaaggcgccccagccaacgacctggacgccgaagtggtacccgatgatgtcaag
caggaccgctgggaccgcttcatggctcaccagcaggccatcagcgccgctcgcctgcag
atgaagatcggtaaagagattgaagtgctgatcgatgaggtggacgaacagggcgctgtg
ggccgctgcttcttcgacgcaccggaaatcgatggcagcgtgttcatcgaaggcgccgaa
ggcctgaacgctggcgacaaggtcatgtgccgcgtggtggatgccgacgagtacgacctg
tgggccgagcgcctctaa
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