Pseudomonas silvicola: LZ023_12405
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Entry
LZ023_12405 CDS
T10729
Name
(GenBank) retention module-containing protein
Organism
psiv Pseudomonas silvicola
Pathway
psiv02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
psiv00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
LZ023_12405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Big_9
Cadherin_4
HemolysinCabind
VWA_2
Cadherin_5
Cel124_C
Motif
Other DBs
NCBI-ProteinID:
WAH60273
LinkDB
All DBs
Position
2646475..2655735
Genome browser
AA seq
3086 aa
AA seq
DB search
MATLIGVVSQVIGQVFAIGTDGSRRQVHQGDRLFAGEQLDTGADGAVAVHLQNGKELTLG
RGSEVTLNQNMLGDMAPHVATHEVAAPSQAELTDVQKIQQAIAAGADPTQAAEATAAGPA
AAGTPAQGGEAGGSHSFVLLTETGGAVDPVVGFPTAGFNGVPEFTVPEVAALTNTNAATV
LVDNPVTLSGLTGDGAGVSVNEANLTDGSNPQPGALTQANSFTVSAPDGLASLSVGGITV
VNNGVVVGVGQSVTTGLGNTLTITGYNPATGQVSYSYTLTGPDTQPSGGGANTITENLPV
TATDSNGSSSSGSVVVSVVDDVPQAINDNPTTPATEQNLVLTGNVLTNDIQGADRIPITA
TSGPITAGTYTGTYGTLVLAPDGSYTYTLNAAGQAFHDLHGGGTGTDSFTYTLNDADGDT
STAVLTLNIANINDQVTITAPEAGGLSTSVNEANLAEGSSPNAAALVQTGQFTVSAPDGL
QTLTVGGVAVVTNGVGISSPVSVVTQLGTLTINSYNPTTGVVSYSYTLTHTDTHPDVQGP
NTLSETFAVVATDTDGSTASTQLTATIVDDVPQAINDSPTTPATEQNLVLTGNVLTNDIQ
GADRIPVTATSGPITAGTYTGTYGTLVLAADGTYTYTLNAAGQAFHDLHGGGSGIETFTY
TLNDADGDTSTAVLTLNIANINDQVTITAPEAGGLSTTVNEANLADGSSPNAAALVQAGQ
FTVSAPDGLQTLTVGGVAVVTNGVGISSPVSVVTQLGTLTINSYNPTTGVVSYSYTLTHT
DTHPDVQGPNTLSETFAVVATDTDGSTASTQLTATIVDDVPQAINDSPTTPATEQNLVLS
GNVLTNDIQGADRIPVTATSGPITAGTYTGTYGTLVLAADGTYTYTLNAAGQAFHDLHGG
GSGIETFTYTLNDADGDTSTAVLTLNIANINDQVTITAPEAGGLSTIVNEANLADGSSPN
AAALVQAGQFTVSAPDGLQTLTVGGIAVVTNGVGISSPVSVVTQLGTLTINSYNPATGVV
SYSYTLTHADTHPDVQGPNTLSETFAVVATDTDGSTASSQLTATIVDDVPKAVADTASLT
EGQTLLTGNVLTNDASGADGFGGVVGVKAGGEISTPVSTGVGVAIAGTYGVLTIAADGST
TYHANPNVANNGNVTDTFTYSVADKDGDISTTTLTITITDAGLKATDVNDVTVFEAALPT
GSHPDSPLEAGSGTVVGYVTGGVGALTYSLAGADTNGNVSSQYGTLHLNADGTYTYTLTS
APQVPGLGTLDTFTLVTTDSVGNQVESQVTIKIVDDVPTAVPDAVTIVEGQYATGNVLAN
DVSGADGFAAVVGVKAGSDTSAPVSGGVGSVIEGTYGSLLIKPDGTSVYYAKPNVANDGT
VTDTFTYSVADKDGDISTTTVTVTIDGAGLKATNVDGVTVFEAALDKNQDGKDLAPGNTT
GSHPDWTSETASGTVAGSVSGGVGALTYSVYGSDTNGDTVGKYGIIHLNADGTYTYTLTS
APQVVGLGTTETFTLVTTDSAGNHVASQLTIKIVDDQPVAVPDFAKLAEGQTAQGNVLAN
DVSGADGFFGVIGVKAGADITKAVTTGVGTVIQGLYGELVIGADGTSVYHANANSVGAKG
GLDIFTYSVMDKDGDISTTTLTIKVDDSHLKATNVDGVTVFEAALDKNQDGKDLAPGNTT
GSHPDWTSETASGTVAGSVSGGVGALTYSVYGSDTNGDTVGKYGIIHLNADGTYTYTLTS
APQVVGLGTTETFTLVTTDSAGNHVASQLTIKIVDDQPVAVPDFAKLAEGQTAQGNVLAN
DVSGADGFFGVIGVKAGADITKAVTTGVGTVIQGLYGELVIGADGTSVYHANANSVGAKG
GLDIFTYSVMDKDGDVSTTTLTIKVDDSHLKATNVDGVTVFEAALDKNQDGKDLAPGNTT
GSHPDWTSETASGTVAGSVSGGVAALNYSLYGSDSSGDMSGKYGVIHMNADGSYTYTLTS
APTVYGLGTTETFAVVTTDSVGNHVASTLTIKIVDDQPHAYADGASIIEGQTVRGNVLAN
DVSGADGFFGVVGVKAGGDTSAPVIGGTNTVVQGLYGFLVITADGSSLYHANANAAAQGA
VTDTFTYSVADKDGDISTTTVTIDIGSSGLHLEPGNGPALTVAEAALDLNQDGKDLAPGT
VVGSDPDSTAETASGSLVGSVSGGVGTITYSIDGAQGGLVHTQHGVIQLNADGSYTYTLT
SAPKTDPAANNGNDYTTDSVTYRATDSQGNTITNQLVIAITDDVPQAGAIDRVAIAPEVN
SNVLLVIDVSGSMDDPSGVGNLSRLDLAKQAIGKLLDQYDGMGDVKVQIVTFSNGVTIPS
NVWVDVATAKAYVATLHANGGTNYDYALGGAETAFTANGKLVGGQNVAYFFSDGNPTLSS
THPTSGGAQSGNETNPNLGDGIDTTEEKAWTDFLSANDIKAYAIGLGNGVDSQYLNPIAY
DGTTGTNTNATVVTDLNNLSSVLSSTVHSVALTGSLLTNGTFGADGGFIKSITVDGVTYT
YDPKANSGEGGMTVAGTASHGTFDTATNSISVATNHGATVVVDMDTGAYTYTSASSGGTT
TFTDKVTFVLADNDGDLSSPADLSVTVTPNSPPVAVADHVITNILSSTIIVPSEALTAND
TDANGDPLTVANTGFDTGWAPKGADFTATSVQTIQFNGTSNTSSNQVKTIDRSDFNISTG
NMTALLVVSGFLGTLGFNNSANASDTLTVHLKAGESLNLADTSNSHLNMTWQLGNGATTT
LGDAGVLTATTDGDYTIHISHATNHTGETAYTLAMNINYAGAANYTPDLPATYTVSDTHG
GSDTAAATITYQDGHTLTGTAGDDILISNDSGSTLLGLAGNDFMIGGKGNDTFDGGTGVN
TVSYHAAKGPVTVDLSITTAQDTVSAGHDTLNNIQNLIGSDYGDHLTGNAQANVITGGVG
NDVINGGGGNDTLIGGLGNNTLTGGDGADTFKYLAGNSGHDTITDFTVGTDKLDLSQLLQ
GDGATASTLDDYLHFKVTGSGSGLVSSIDVSTTAGGAASQTIDLQGVNLASHYGVTPGSG
GTVSTHDTATIISGMLGDHSLKVDVA
NT seq
9261 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgttgattggtgtagtcagtcaggtaatcggacaggttttcgcgattggcacc
gacggcagccgccgccaagtgcaccagggggaccggttgttcgcgggtgaacaactggac
accggtgccgatggcgcggtggcggtgcatttgcagaacggcaaggaactgaccctgggg
cgcggcagtgaagtcaccctcaaccagaacatgctcggtgacatggcgccccatgtggca
acccatgaagtggcggcgcccagccaggccgagctcaccgatgtgcagaaaatccagcaa
gccatcgccgccggcgccgaccctacccaggccgccgaagcgactgcggcagggcctgcc
gccgcaggcacccctgcccagggtggcgaggcgggcggtagccacagcttcgtgctgctg
accgaaaccggtggtgcggtcgaccctgtggtgggcttccccaccgccgggttcaacggt
gtgcccgagttcaccgtgcctgaggtggcggcactgaccaacaccaacgccgccacggta
ctggtcgataacccggtgaccctgtccggcctgaccggtgatggcgcgggggtgagcgtc
aacgaggccaacctgaccgatggctccaacccgcagccgggtgccctgacccaggccaac
agcttcacggtgtcggcgcctgacggcctcgccagcctgagcgtgggcggcatcaccgtg
gtcaacaacggcgtggtagtaggcgtgggccagtccgtcaccaccggcctgggcaatacg
ctgaccatcaccggctacaaccctgccaccggccaggtcagctacagctacaccctcacc
ggcccggatacccagcccagcggcggtggcgccaacaccatcaccgaaaacctgccggtt
accgccacggacagcaatggctccagcagcagcggctcggtagtggtcagcgtggtcgac
gatgtgccccaggccatcaatgacaaccccaccacgcctgccaccgagcagaaccttgtg
ctgaccggcaacgtcttgaccaatgacatccagggcgccgaccgcatcccgatcaccgcc
accagcggcccgatcacggccggtacctacaccggtacctatggcaccctggtgctggcg
cccgacggcagttatacctataccctcaacgcggccggccaggcgttccatgatctgcac
ggtggcggtaccggcaccgacagtttcacctacaccctcaacgatgccgacggcgacacc
agcaccgcggtgctgacgctcaacatcgccaacatcaacgaccaggtcaccatcaccgcg
cctgaagcgggcgggctgtcgaccagcgtcaatgaagccaatctggccgaaggcagcagc
cccaacgcggccgccctggtgcagaccgggcagttcaccgtcagcgcccccgacggcctg
cagaccctgaccgtgggcggcgtcgccgtggtcaccaatggcgtgggcatcagctcgccg
gtcagcgtcgttacccaattgggcaccctgaccatcaacagctacaaccccaccacgggc
gtcgtcagctacagctataccttgacccacaccgacacccatcccgacgtgcagggcccc
aataccctcagcgagacgttcgcggtggtggccactgacaccgacggcagtaccgccagt
acccagctcaccgcgaccatcgtcgacgacgtgccccaagccatcaacgacagccccaca
acaccggccaccgagcagaacctggtgctgaccggcaacgtcctgacgaatgatatccag
ggtgccgaccgcatccctgtcacggccaccagcggcccgatcacggccggtacctacacc
ggcacctatggcaccctggtgctggcggccgacggtacctacacctacaccctcaacgcc
gccggccaggccttccatgacctgcacggtggcggcagcggcatcgagacgttcacctac
accctcaacgatgccgacggtgacaccagcaccgcggtgctgacgctcaacatcgccaat
atcaacgaccaggtcaccatcaccgcgcctgaagcaggcgggttgtcgaccaccgtcaat
gaagccaacctggccgatggcagcagccccaacgcggccgcgctggtgcaggccgggcag
ttcaccgtcagcgcccccgacggcctgcagaccctgaccgtgggcggcgtcgccgtggtc
accaatggcgtgggcatcagctcgccggtcagcgtcgttacccaattgggcaccctgacc
atcaacagctacaaccccaccacgggcgtcgtcagctacagctataccttgacccacacc
gacacccatcccgacgtgcagggccccaataccctcagcgagacgttcgcggtggtggcc
actgacaccgacggcagtaccgccagtacccagctcaccgcgaccatcgtcgacgacgtg
ccccaagccatcaacgacagccccacaacaccggccaccgagcagaacctggtgctgagc
ggcaacgtcctgacgaatgatatccagggtgccgaccgcatccctgtcaccgctaccagc
ggcccgatcacggccggcacctacaccggcacctacggcaccctggtgctggcggccgac
ggtacctacacctacaccctcaacgccgccggccaggccttccatgacctgcacggtggc
ggcagcggcatcgagacgttcacctacaccctcaacgatgccgacggtgacaccagcacc
gcggtgctgacgctcaacatcgccaacatcaatgaccaggtcaccatcaccgcacctgaa
gcaggcgggttgtcgaccatcgtcaatgaagccaacctggccgatggcagcagccccaac
gcggccgcgctggtgcaggccgggcagttcaccgtcagcgcccccgacggcctgcagacc
ctgaccgtgggcggcatcgccgtggtcaccaatggcgtgggcatcagctcaccagtcagc
gtcgtcacccagttgggcaccctgaccatcaacagctacaaccccgccacgggcgtcgtc
agctacagctataccttgacccacgctgacacccatcccgacgtgcagggccccaatacc
ctcagcgagacgttcgcggtagtggccacggacaccgatggcagcaccgccagcagccag
ctcactgcaaccatcgtcgacgatgtgcccaaggcggtcgccgataccgcctcgctcacc
gaaggtcagacgctgctgaccggtaacgtgctgaccaatgacgcctcgggtgccgatggc
ttcggtggtgtggttggcgtcaaggccggtggcgaaatctctacccctgtcagcaccggc
gttggggtggctatcgccggtacctatggcgtgctcaccatcgccgccgatggcagcacc
acctaccatgccaaccccaacgtcgccaacaacggcaatgtcaccgataccttcacctac
tcggtggcggacaaggacggtgacatcagcaccaccacgctgaccattaccattaccgac
gcgggcctcaaggccaccgacgtcaatgacgtcaccgtgttcgaagcggcgctgcccacc
ggtagccatcccgactcgcccctggaggccggcagcggcaccgtggtgggctatgtcacc
ggaggggtcggcgcgctgacctacagcctggcgggcgccgacaccaacggcaacgtcagc
agccagtacggcaccttgcacctcaacgccgacggcacctatacctacaccctcaccagc
gccccgcaagtgcccgggctggggaccctggacaccttcaccctggtgaccaccgacagc
gtcggcaaccaggtggaaagccaggtcaccatcaagatcgtcgacgatgtgcccaccgcg
gtgcctgacgcggtcacaatcgtggaaggccaatacgccacgggcaatgtcctggccaac
gatgtttctggcgcggacggctttgccgcagtggtcggggtcaaggctggcagcgacacc
tccgcgccggtgagcggtggtgtgggtagcgtgatcgaaggcacctacggcagcctgctc
atcaaacccgatggcaccagcgtctactacgccaagcccaacgtggccaacgatggcacc
gtgaccgatacgttcacttactcggtggccgacaaggacggagacatcagcaccaccacg
gtcaccgtcaccatcgacggggctggcctgaaggccaccaacgtcgatggcgtcaccgta
ttcgaagcggcactggacaagaaccaggacggcaaggacctggcgcctggcaacaccact
ggcagccacccggactggacgtcggaaaccgccagcggcaccgtggccggttctgtcagt
ggcggggtaggggcgttgacctacagcgtctacggctccgacaccaacggcgataccgtg
ggcaagtacggcatcattcacctgaacgccgacggcacctacacctacaccctgaccagc
gccccacaggtcgtcggcctgggcaccaccgaaaccttcaccctggtgaccaccgacagc
gccggcaaccacgtcgccagccagctcaccatcaagatcgtcgacgaccagcccgtggcc
gtgccggacttcgccaaacttgccgaaggccagaccgcccagggtaatgtcctggccaac
gatgtctcgggcgcggatggtttcttcggcgtgatcggcgtcaaggcgggtgcggatatc
accaaggccgtgaccacgggcgtgggcacggtcatccagggcctgtacggcgaactggtg
attggtgctgacggcaccagcgtgtaccacgccaacgccaactcggtcggcgccaagggc
ggcctcgacattttcacctactcggtgatggacaaggacggtgacatcagcaccaccacc
ttgaccatcaaggtcgacgactcgcacctgaaggccaccaacgtcgatggcgtcaccgta
ttcgaagcggcactggacaagaaccaggacggcaaggacctggcgcctggcaacaccacc
ggcagccacccggactggacgtcggaaaccgccagcggcaccgtggccggttctgtcagt
ggcggggtgggggcgttgacctacagcgtctacggctccgacaccaacggcgataccgtg
ggcaagtacggcatcattcacctgaacgccgacggcacctacacctacaccctgaccagc
gccccacaggtcgtcggcctgggcaccaccgaaaccttcaccctggtgaccaccgatagc
gccggcaaccacgtcgccagccagctcaccatcaagatcgtcgacgaccagcccgtggcc
gtgccggacttcgccaaactcgccgaaggccagaccgcccagggtaatgtcctggccaac
gatgtctcgggcgcggatggtttcttcggcgtgatcggcgtcaaggcgggtgcggatatc
accaaggccgtgaccacgggcgtgggcacggtcatccagggcctttacggcgaactggtg
attggtgctgacggcaccagcgtgtaccacgccaacgccaactcggtcggcgccaagggc
ggcctcgacattttcacctactcggttatggacaaggacggtgacgtcagcaccaccacc
ttgaccatcaaggtcgacgactcgcacctgaaggccaccaacgtcgatggcgtcaccgta
ttcgaagcggcactggacaagaaccaggacggcaaggacctggcacctggcaacaccacg
ggcagccacccggactggacgtcggaaaccgccagcggcaccgtggccggttccgtcagt
ggcggggtagcggcgctgaactacagcctgtacggctccgacagcagcggggacatgtcc
ggcaagtatggcgtcattcacatgaacgccgatggcagctacacctacaccctgaccagc
gcgccgaccgtgtacggcctgggtaccaccgaaacgttcgccgtggtgaccaccgatagc
gtcggcaaccacgtcgccagcaccttgaccatcaagatcgtcgacgaccagccccacgcc
tacgccgatggcgcgtccatcatcgagggccagaccgtgcgcggcaacgtgctggccaac
gatgtctccggcgccgatggcttctttggcgtggtaggggtgaaggccggcggcgacacg
tctgccccggtcatcggcggcaccaataccgtcgtgcaaggcctgtatggtttcctggtg
atcaccgccgatggcagcagcctgtaccatgccaatgccaacgcggcggcccagggcgct
gtcaccgacaccttcacctactcggtggcggacaaggatggtgacatcagcaccaccacc
gtcaccatcgacatcggcagcagtggcctgcacctggagcctggcaatggcccggcactg
accgtggccgaagccgcgctggacctgaaccaggacggcaaggatctggcccccggcacc
gtggtgggcagcgaccccgactccaccgccgaaaccgcgagcggctctttggtgggctct
gtctcgggcggtgtcggtaccattacctacagcatcgacggcgctcagggcgggctggtt
cacacccagcacggggttatccagctgaacgcggatggcagctatacctacaccctgacc
tcagcgcccaagaccgaccctgcggccaacaacggtaatgactacaccactgacagcgtc
acgtaccgcgccaccgacagccagggcaacaccatcaccaaccagttggtgatcgccatc
accgacgatgtgcctcaggcgggggccatcgatcgggtagcgatcgcgcccgaggtcaac
tccaacgtgctgctggtgatcgacgtctcaggcagcatggatgacccgtccggggtcggc
aacctgtcgcgcctggacctggccaagcaggccattggcaagctgctggaccagtacgac
ggcatgggggatgtgaaggtacagatcgtcacgttcagcaatggcgtgaccatccccagc
aacgtctgggtcgacgtggccacggccaaagcctacgtcgccaccttgcacgccaatggc
ggcaccaactatgactacgcgctgggcggtgccgagactgcgttcacggccaacggcaaa
ctggtggggggccagaacgtggcctacttcttctctgacggcaacccgacgttgtccagc
acccatccgacctccggcggcgcgcagtcggggaacgagaccaaccccaacctgggcgat
ggcatcgacaccaccgaggagaaagcctggaccgacttcctcagcgccaatgatatcaag
gcctatgccattggcctgggcaacggcgtcgacagccagtacctgaaccccattgcctat
gacggcaccaccggcaccaacaccaatgccaccgtggtcaccgacctcaacaacctcagt
agcgtgctcagcagcaccgtgcacagcgtggcgctgaccggaagcctgttgaccaacggc
accttcggcgccgatggcggcttcatcaagtcgatcaccgtggacggcgtgacctatacc
tacgatcccaaggccaatagcggcgaaggcggcatgaccgtggccggcacggccagccat
ggcacgttcgacaccgccaccaacagcatcagcgtggccaccaaccacggcgccacggtg
gtggttgacatggacaccggtgcttacacctacacgtccgcttccagcggtggtaccacc
accttcaccgacaaggtgaccttcgtgctggccgacaacgatggcgacctgtccagcccg
gccgacctgagcgtgaccgtgacgccgaactcgccaccggtggcggtggccgaccatgtg
atcaccaacattctgtcctccaccatcatcgtgcccagcgaggcactgacggccaacgac
accgatgccaatggcgacccgctgaccgtggccaacaccggctttgataccggctgggcg
cccaagggagcggacttcacggccacctcggtgcagaccattcagttcaatggcaccagc
aacaccagcagcaaccaggtcaagaccatcgaccgcagtgacttcaacatcagcacgggc
aacatgacggccctgctggtggtcagcggtttcctcggcaccctgggcttcaacaacagt
gccaacgccagtgacaccctgaccgtgcacttgaaggccggcgagagcctgaacctggcc
gataccagcaacagccacctgaacatgacctggcaactgggcaatggcgccactaccacc
ttgggtgacgccggcgtgctcacggccaccaccgacggtgactacaccatccacatcagc
cacgccaccaaccataccggggagacggcctataccctggccatgaacatcaactacgcc
ggggcggccaactacacaccggacctgccggccacctacaccgtcagcgacacccacggc
ggcagcgataccgcggcggccaccatcacctaccaggacggccataccctgaccggcacc
gcaggtgatgacatcctgatcagcaacgacagcggcagcaccttgctgggcctggcgggc
aatgacttcatgatcggcggcaagggcaatgacacctttgacggcggcacaggcgtcaac
accgtcagctaccacgcggccaagggcccggtcaccgtggacctgagcatcaccacggcc
caggacaccgtcagtgctggccatgacaccttgaacaacatccagaacctgatcggctcc
gattatggcgaccacctgaccggcaacgcccaggccaacgtcatcaccggtggcgtgggc
aatgacgtgatcaatggtgggggcggcaacgacaccctcatcggtgggctgggcaacaac
accctgaccggcggcgacggtgccgataccttcaagtacctggcaggcaacagcgggcac
gacaccatcaccgacttcaccgtgggcaccgacaagctcgacctgtcgcaactgctgcaa
ggtgacggcgccacggcttcgaccctggatgactacctgcacttcaaggtcactggcagc
ggttcggggctggtctccagcatcgacgtcagcaccaccgccggcggcgcggcgagccag
accatcgacttgcaaggggtgaacctggccagccattacggggtaaccccaggcagtggc
ggcacggtgtcgacccatgacacggcgacgatcatcagcgggatgctgggggaccattca
ttgaaggtggatgtggcgtga
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integrated database retrieval system
