Pseudomonas silvicola: LZ023_12425
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Entry
LZ023_12425 CDS
T10729
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
psiv Pseudomonas silvicola
Pathway
psiv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psiv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LZ023_12425 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psiv03019
]
LZ023_12425 (recQ)
03400 DNA repair and recombination proteins [BR:
psiv03400
]
LZ023_12425 (recQ)
Enzymes [BR:
psiv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LZ023_12425 (recQ)
Messenger RNA biogenesis [BR:
psiv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LZ023_12425 (recQ)
DNA repair and recombination proteins [BR:
psiv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LZ023_12425 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
HTH_40
ResIII
Sigma70_r4_2
HTH_23
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
WAH60277
LinkDB
All DBs
Position
2659635..2661776
Genome browser
AA seq
713 aa
AA seq
DB search
MLEQAQRVLKDIFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQVPALLRPGLA
VVVSPLIALMDDQVATLEELGVAAASLNSTLSAEQQRDLAARIRRGEVKMLYLAPERLVQ
PRMLDFLRNLDIALFAIDEAHCVSQWGHDFRPEYLQLGQLAEQFPHVPRIALTATADKRT
REEIVTRLHLQDAERFLSSFDRPNIFYRIVPKENPRKQLMTFLAERRSDAGIVYCLSRKK
VDETAAFLCEQGFPALSYHAGLPADVRAQNQKRFLNEEGLIMVATIAFGMGIDKPNVRFV
AHMDLPKSLEAYYQETGRGGRDGLPADAWMAYGLQDVLMLKQMLQNSEGDERHKRVEQHK
LDAMLALCEETRCRRQALLAYFDEDMPNPCGHCDNCMDGVQTWDATEPARQALSAIFRTG
QRYGVGHLVDVLLGKDTEKVRNFGHEKLSVFGVGKARGEHEWRSLFRQLVARGLADVDLD
GYGGLRLSDTCRPLLRGEVTLLLRLEPKPQKGASTKGAGSGSPASQLVRAEERDQWEALR
TLRRKLAEEHSVPPYVIFPDSTLLEMLRSQPGSMAEMAQVSGVGARKLERYGEAFLAVLN
GGAEEAPRAVADIRHELISLARAGMTPAQIAGQLQCTEKNVYTLLAEAIGQQQLSLEQAL
DLPEDLMGEVQDAFLDGEGELPPVSDVAPLFAGRVPEGVLYCVRAALQSEFEM
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaacaggctcaacgcgtccttaaggacatcttcggctacgacagttttcggggt
cgccagggtgccattatcgaacgcgtggccagcggcggcgatgccctggtgctgatgccc
accggcggcggcaagtccttgtgcttccaggtgcccgcgctgctgcgcccgggcctggcg
gtagtggtctcgccgttgatcgcgctgatggacgaccaggtcgccaccctggaggaactg
ggcgtggccgcggcctcgctgaactccaccctcagcgccgagcagcagcgcgacctggcc
gcgcgcattcgccgtggtgaagtgaagatgctctacctggcccccgagcgcctggtgcag
ccacgcatgctcgacttcctgcgcaacctggacattgccctgttcgccatcgacgaagcc
cactgcgtgtcccagtggggccacgacttccgccccgaatacctgcaactggggcagttg
gccgaacagtttccccatgttccgcgcatcgccctgacggccaccgccgacaagcgcacc
cgcgaggaaatcgtcacccgcctgcacttgcaggacgccgaacgttttctgtccagcttc
gaccggccaaacattttctaccgcatcgtgcccaaggaaaacccgcgcaagcagttgatg
acgttcctggccgagcggcgcagcgacgctggcatcgtctattgcctgtcgcgcaagaaa
gtcgatgaaaccgctgccttcctgtgcgaacagggcttcccggccctgtcctaccatgcg
ggcctgccggccgacgtacgagcccagaaccagaagcgcttcctcaacgaggaaggcctg
atcatggtcgccaccattgccttcggcatgggcatcgacaagcccaacgtgcgtttcgtg
gcccacatggacctgcccaagtcgctggaagcctattatcaggagaccgggcgcggtggt
cgtgacggcctgccggccgacgcctggatggcctacggcctgcaagacgtgctgatgctc
aagcagatgctgcagaactccgagggtgacgagcggcacaaacgcgtggagcagcacaag
ctcgacgccatgctggccttgtgcgaggaaacccgctgccgccgccaggcgctgctggcg
tacttcgatgaagacatgcccaacccctgcgggcattgtgataactgcatggacggcgtg
caaacctgggacgccaccgaaccggcgcgccaggcgctgtcagcgatcttccgtactggc
cagcgctatggcgtcgggcacctggtggacgtgctgctgggcaaggacaccgaaaaggtg
cgcaatttcggccacgagaaactctcggtgttcggcgtgggcaaggcccgtggcgagcac
gagtggcgttcgctgtttcgccaattggtggcccgcggcctggctgacgtcgaccttgat
ggctacggcggcctgcgcctgagcgacacctgccggccgctgctgcgcggtgaagtgacc
ttgctgctgcgcctggagcccaaaccgcagaaaggggcgagcaccaaaggtgcagggtcc
ggcagccctgccagccagctggtgcgggccgaggaacgcgaccagtgggaagcgctgcgc
accctgcggcgcaagctcgccgaagagcacagcgtgccgccgtacgtcattttccccgat
tccaccttgctggaaatgctgcgcagccagccaggcagcatggccgagatggcccaggtc
agcggcgtgggtgcgcgcaagctggagcgctatggcgaagcgttcctggccgtgctcaac
ggcggggcagaggaggcgcctcgggccgtggccgacattcgccacgaactgatcagcctg
gcgcgcgccggcatgaccccggcgcagatcgccggccagttgcaatgcaccgagaagaat
gtctacaccttgctggccgaggccattggccaacagcaattgtcgcttgaacaggcgctc
gatttgcccgaggacctgatgggcgaagtgcaggatgctttcctggacggtgagggcgag
ttgccaccggtcagtgacgtggcgccgctgtttgccggcagggtaccggaaggcgtcctg
tattgcgtgagggcggcgttgcagtccgaatttgaaatgtaa
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