Pseudomonas silvicola: LZ023_12640
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Entry
LZ023_12640 CDS
T10729
Symbol
ihfB
Name
(GenBank) integration host factor subunit beta
KO
K05788
integration host factor subunit beta
Organism
psiv Pseudomonas silvicola
Brite
KEGG Orthology (KO) [BR:
psiv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psiv03032
]
LZ023_12640 (ihfB)
03036 Chromosome and associated proteins [BR:
psiv03036
]
LZ023_12640 (ihfB)
03400 DNA repair and recombination proteins [BR:
psiv03400
]
LZ023_12640 (ihfB)
DNA replication proteins [BR:
psiv03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
LZ023_12640 (ihfB)
Chromosome and associated proteins [BR:
psiv03036
]
Prokaryotic type
Nucleoid associated proteins
IHF (integration host factor)
LZ023_12640 (ihfB)
DNA repair and recombination proteins [BR:
psiv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Facilitator
LZ023_12640 (ihfB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_1
HU-CCDC81_euk_2
Motif
Other DBs
NCBI-ProteinID:
WAH60317
LinkDB
All DBs
Position
2710200..2710499
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AA seq
99 aa
AA seq
DB search
MTKSELIDRIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRV
GRNPKTGQSVSLDGKFVPHFKPGKELRDRVNEEEEQVRA
NT seq
300 nt
NT seq
+upstream
nt +downstream
nt
atgacgaagtctgaactgattgaccgtattgtcacccatcaaggcttgctctcatccaag
gatgtggaactggccatcaagaccatgcttgaacagatgtcccagtgcctggcaaccggg
gatcggattgagatccgcggctttggcagcttttcgttgcactaccgcgcgccgcgggtg
gggcgtaacccgaagaccgggcagtcggtcagcctggatggaaagtttgtgcctcatttc
aagccggggaaagagctgcgagatcgcgtgaatgaggaagaagaacaggtgcgtgcctga
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