Pseudomonas silvicola: LZ023_16645
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Entry
LZ023_16645 CDS
T10729
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
psiv Pseudomonas silvicola
Pathway
psiv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psiv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LZ023_16645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psiv03019
]
LZ023_16645
03400 DNA repair and recombination proteins [BR:
psiv03400
]
LZ023_16645
Enzymes [BR:
psiv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LZ023_16645
Messenger RNA biogenesis [BR:
psiv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LZ023_16645
DNA repair and recombination proteins [BR:
psiv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LZ023_16645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
DEAD
AAA_19
Helicase_C
UvrD_C
UvrD_C_2
ResIII
Viral_helicase1
Ribosomal_L18
Motif
Other DBs
NCBI-ProteinID:
WAH61036
LinkDB
All DBs
Position
3558076..3563208
Genome browser
AA seq
1710 aa
AA seq
DB search
MASPHAVPKSLILDLEVAPAQGTRPEQVFMLGALRPDLAAELEIKVTPKTIDEAYRQLDR
LGEGAAFVLGHNVLDHDLPILLQQSPGLALHRLPVVDTLRLSPLAFPQNPYHRLVKDYKL
IRDSLNSPLADCRSTLVLFQDQRDAFEQLNQQHQAELLCYQALLAPDARSDLHGFFYSLT
GRDPVSTSELRTLIARLLRETDPTLTRTLKVCRTRLAQLLAVDVLNPTLHQPLAYVLAWL
RVSGGNSVLAPWVRHQFPDVGRLLGELRDTPCGGADCDYCSTTHDPRHELKRYFGFDDFR
YEAPGESLQHDVVLDGMRGKHVLAILATGGGKSLCYQLPALNRYHRNASLTVIVSPLQSL
MKDQVDGLLARNVQCAATLNGLLTMPERAEVLEKVQMGDVGILLVSPEQFRNKAFRRAVR
QRQVGAWIFDEAHCLSKWGNDFRPDYQYVSRFIGEYTGDGLLAPIGCFTATAKPDVLEDI
REHFREHLNIEFDSHIGTHERINLSFEVLPCPRAEKWARTHQLLDDQLSSGEGGAVVFVS
SRKNAEELSDFLIGQGWLCRHFHAGLEPHDKTDTQDAFKAGQLRVIVATNAFGMGVDKAD
IRLVVHADIPGSLENYLQEAGRAGRDQQAARCVLLYDLQDIETQFGMTERSKLSLRDIQQ
ILRKLRREADRRKGGKLVITAGEVLADEQVDTRFNADERDAQTKVVTAVAWLERGQYLKR
EENHTQIFPATLILSQEDAEKRLAKAGLPARRLSEFQAILRYLYDADADQRIDTDALMRL
TSLTSDEVAATLRQLEEMGVLENDSKLTLYLRYGVVGASTQRLEGSLELERCLLDLLSEQ
GPDAEQGAWQDLNLAALTQQLKALSGQGELLPLHVVRLLRSLAHDHDADSQQRSSFELRQ
VSSDYLKLRIKGGLAWRQVQQLGKKRRDLAVVLLDRLVAKLPPGMRGKDLLVETTFGELA
RVIEDDLHLRVHIPGVQRRKAVEHVLLYLHRQEIITLNHGMTVMRRAMTIEVNPAKRGNY
LKDDYLRLDEHYREKRIQVHVMREYAEVALGEMADTLRLVMHYFSDAKQAFIKRYFNGRE
DILKLATSEESWRAIIDRLSTPQRLVVADDDDLNRLVLAGPGSGKTRVIVHRIAYLLRVR
RVPASSIVALTFNRHAANEIKTRLVKLVGADAFGVNVMTYHRMAMRLTGTRFTRGQAVEA
GTLAQVLDEAVELLEGKRQVEGEDDLREQLLRGYRYILVDEYQDIDETQYRLISALAGRN
AEEEGRPCILAVGDDDQNIYAWRDTNNRYILRFREDYQASTSYLTDNYRSTAHIIAAANQ
LIERNPDRLKRHHPIRIDPARSEQPAGGEWQALDAQRQGRVLRLRIEGDEPMLANLQAQA
VVAQLQRLLELEQGDWGRCAVLSRTHHYLAPIQAWCEQNGVGYHLAADKELTLPLTVQRG
FVMAIEHLQGTGETRGVQQHWGALQTACVEPEWHDFFAIAFGQLLAELGECQLSAQAVID
WLYDYARELRHQPRTGLYLGTVHSAKGLEFSHVIVLDGGWPTHPDTLNDERRLYYVGMTR
AEHTLTLCEFPGGNPFSPQVNGEVMNLTFAGRYEAMLEQHYLLLSLKNIDLDFAGRQAAT
AQVHGAIGQLQAGDELRLQAQGERYVIMTPQGQIVARTAKAFKLALDAERCEVAGIVVRH
SEYCEESYRAFHKCDRWEVVVPRIIGRAAT
NT seq
5133 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgccccatgcagtacccaagagcctgatcctggacctcgaagtcgcccccgcc
cagggcactcggcccgagcaggtgttcatgctcggcgccctgcgcccggacctggcggct
gagctcgaaataaaggtcacccccaagaccatcgacgaggcgtaccggcaactggatcgt
ctgggcgaaggggcagccttcgtgctgggccacaatgtgctcgatcatgacctgcccatc
ctgctgcaacagtcgccaggcctggcactgcaccgcctgccggtagtcgacaccctgcgg
ttgtcgcccctggccttcccgcagaacccataccacaggctggtcaaggactacaaactg
atccgcgacagcctcaattcgccgctggcagattgtcgttccacgctggtccttttccag
gaccagcgcgatgcgttcgaacagttgaaccagcaacaccaggccgagctgctgtgttat
caggcactgttggctccggatgcgcgcagcgacctgcacggttttttctactcgctcacc
ggccgcgacccggtgtcgacaagcgaactgcgcactctcatcgcgcggctgctgcgcgaa
accgatcccaccctgacacgtaccctgaaggtctgtcggacgcgcctggcgcagttgttg
gccgtcgacgtgctgaatccgacgcttcaccagcccctggcctatgtactggcctggctg
cgggtatccggtggcaactcggtgctggcgccctgggtgcggcatcagtttcccgacgtg
gggcgcttgcttggggaactgcgcgataccccgtgcggcggggccgattgcgattattgc
tcgaccacccatgacccgcgccatgagctcaagcgctatttcggcttcgatgacttccgt
tacgaggcgcccggcgaaagcctgcagcacgatgtggtgttggacggcatgcgtggcaag
cacgtgctggcgattctggccaccggtggcggtaagtcgctgtgttaccagttgccggcg
ctgaaccgctatcaccgcaatgccagcctgacggtgatcgtctcgccgctgcagtcgctg
atgaaggatcaggtcgatggcctgttggcccggaatgtccagtgcgcggccaccctcaac
ggtctgctcacgatgcccgagcgggcggaggtgctggagaaggtgcagatgggcgatgtg
ggaattttgctggtatcccctgagcagtttcgcaacaaggcgttccggcgggccgtacgc
cagcgccaagtgggtgcctggatcttcgacgaggcgcattgcctgtcgaaatggggcaat
gatttccgcccggactatcaatacgtgtcgcggttcatcggtgaatacaccggcgacggc
ctactggcgcccatcggttgcttcaccgccacggcgaaaccggacgtgctggaagatatc
cgcgaacatttccgcgagcacttgaacatcgagttcgacagccacatcggcactcatgag
cgaatcaacctcagcttcgaggtgttgccctgcccacgggcggagaaatgggcacgcacc
caccagttgctcgatgatcaactgagcagcggtgagggcggggcggtagtgtttgtctcc
agccgcaagaacgctgaggaattgtccgattttctgatcggccagggctggctgtgccgg
catttccatgccggcctggagccccatgacaagaccgatactcaggatgccttcaaggcc
ggccagttgagggtaatcgtcgccaccaacgcctttggcatgggcgttgacaaggccgat
atccgcctggtggtgcatgccgacatccctggctcgctggaaaactatctgcaggaagct
ggccgtgccggtcgtgaccagcaggcggcgcggtgtgtgctgttgtatgacctgcaggac
atcgagacgcagttcggcatgaccgaacgctcgaaactgtccctgcgcgatattcagcag
atcctgcgcaagctgcgccgcgaagctgaccggcgcaagggcggcaagctggtcatcacc
gctggcgaagtgctggccgacgagcaggtggacacccgtttcaacgccgacgaacgcgac
gcacagaccaaggtggtgacggcggtggcctggctggagcgcggccagtacctcaagcgt
gaagaaaaccatactcagatcttcccggctaccttgatcctgagccaggaggatgcggaa
aaacgcttggcgaaggccggcctgccggcgcgccggctcagcgaattccaggccatcctg
cgctacctgtacgacgccgatgccgatcagcgcattgacactgacgcactgatgcgcctg
accagtctgaccagcgacgaggtggctgccaccctcaggcaactggaagagatgggggtg
ctggagaacgattcgaagctcacgttgtacctgcgttatggggtggtgggggcttccacc
cagcgcctggagggcagcctggagctggaacggtgcctgcttgatctactgtctgagcag
ggcccggacgccgagcagggtgcctggcaggatctgaaccttgccgccctgacccaacag
ctcaaggcgctcagcgggcaaggggagctgctgcccttgcatgtagtgcgcctgttgcgc
agcctggcccacgaccatgatgccgacagccagcagcgcagcagtttcgagttgcgccag
gtgagctctgattatctcaaactgcggatcaagggcggcctcgcctggcggcaggtccag
caattgggcaaaaagcgccgcgacctggcggtggtgctcctggaccgcctggttgccaaa
ctaccgcctggaatgcgcggcaaagacttgctggtggagaccacgtttggcgagttggcc
cgggtgatcgaagatgacctgcatctgcgcgtgcatatccccggcgtgcagcggcgcaaa
gcggtcgagcatgtgctgctgtacctgcaccgacaggaaatcatcacgctcaaccatggc
atgaccgtgatgcgccgcgccatgaccatcgaagtcaaccccgccaagcgcggcaattac
ctgaaggacgattatctgcgcctggacgagcactaccgggaaaaacgcattcaggtgcat
gtcatgcgtgaatacgctgaagtggcactgggggaaatggctgataccctgcgcctggtc
atgcactacttctccgatgccaagcaggccttcatcaagcgctatttcaatggccgcgaa
gacatcctcaagctggcgaccagtgaagagtcctggcgcgccatcatcgaccgcctcagc
acgccccagcgcctggtggtggccgatgacgatgacctcaaccgcctggttctggcgggc
cccggttcggggaagacccgtgtcatcgtgcaccgtatcgcctacttgttgcgcgtgcgc
cgggtaccggccagtagcatcgtggccttgaccttcaaccgccatgccgccaacgagatc
aagacgcggctggtcaaactggtgggtgctgatgcgttcggcgtcaatgtcatgacctat
caccgcatggcgatgcgcctgacgggcacgcgctttactcgtgggcaggccgtggaggcg
gggactctggcgcaggtgctcgacgaagccgtcgagctgctggaaggcaagcgtcaagtg
gagggcgaggatgacctgcgtgagcaattgctgcgaggctatcgctacatcctggtggac
gaataccaggacatcgacgaaacccagtaccgcctgatcagcgccctcgccgggcgcaac
gcggaggaggaggggcgcccgtgcatcctggcggtaggcgatgacgaccagaacatctat
gcctggcgcgacaccaacaaccgctacatcctgcggttccgtgaggactaccaggccagc
accagctacctgaccgacaactaccgctccacggcccatatcatcgccgccgccaaccag
ttgatcgagcgcaacccagaccgcctgaagcgccaccaccctattcgtatcgacccggcg
cgcagtgagcagcctgctggcggagagtggcaagcgctggatgcgcaacgccaaggccgt
gtcctgcgcctgcgcatcgagggcgacgagccgatgctcgccaacctgcaggcccaggcg
gtcgtggcccaattgcagcgactgctggagctggagcaaggcgattggggacgttgcgca
gtgttgtcacgcacccatcactacttggcgcccatccaggcctggtgcgagcaaaacggt
gtcggctatcacctggcggccgacaaggaactgacgctgccgttgacggtgcagcgtggt
tttgtgatggccatcgagcacttgcagggcacaggtgaaacccggggggtgcaacagcac
tggggcgcgctgcaaaccgcctgtgtggaacccgaatggcacgacttcttcgccatcgcc
ttcgggcagttgctggcggaactgggcgagtgccagctcagtgcccaggcggtgatcgac
tggctctacgactatgcccgggagctgcgtcaccaaccccgcacgggcctctacctgggt
accgtgcactcggccaaggggctggagttcagccatgtgatcgtgcttgacggcggctgg
ccgacccatccggataccctcaacgatgagcgccgcctatattacgtgggcatgacccgc
gcggagcacaccctgaccctgtgtgagtttccaggtggcaatccgttcagcccgcaggtg
aacggggaggtcatgaacctgaccttcgccggtcggtacgaagccatgctggaacagcat
tacctgctattgtcgctgaagaatatcgacctcgacttcgcggggcgtcaagcggcgacg
gcccaggtgcacggggccatcggccaattgcaggctggcgatgaattgaggttgcaggcc
caaggggagcgttacgtgatcatgaccccgcaaggccagatcgtggcccgaacggccaag
gcattcaagctggccctggacgccgagcggtgtgaagtagcgggcatcgtggtgcggcat
tccgagtattgcgaggagtcgtatcgcgccttccacaagtgcgatcgctgggaagtggta
gtgcccaggataatcgggcgcgcggcaacatga
DBGET
integrated database retrieval system
