Pseudomonas silvicola: LZ023_32670
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Entry
LZ023_32670 CDS
T10729
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
psiv Pseudomonas silvicola
Pathway
psiv03410
Base excision repair
psiv03430
Mismatch repair
psiv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psiv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LZ023_32670 (recJ)
03430 Mismatch repair
LZ023_32670 (recJ)
03440 Homologous recombination
LZ023_32670 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psiv03400
]
LZ023_32670 (recJ)
DNA repair and recombination proteins [BR:
psiv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LZ023_32670 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LZ023_32670 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LZ023_32670 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
WAH57665
LinkDB
All DBs
Position
complement(7193008..7194717)
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AA seq
569 aa
AA seq
DB search
MRIEPRQLPAILPFLGDLPPLLTRLYAARGVQSEAELDKSLARLIPYQQLKGIDAAVDLL
VDALAQRQRILIVGDFDADGATASSVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVAV
ALQRQPDLLVTVDNGISSVDGVAAAKAAGLKVLVTDHHLPGPELPAADAIVNPNQPGCEF
PSKSLAGVGVIFYVLMALRARLRSLGHYDSKPQPNIGELLDLVALGSVADVVPLDANNRI
LVHQGLERIRAGRARPGLKAILEVAKRDHRRITSTDLGFILGPRLNAAGRLDDMSLGIEC
LLSDDIGLAQAMAAQLDELNQDRKSIEQGMQREALAQLKDLPLEDMPFGLCLFDADWHQG
VIGILASRLKERYHRPTIAFADAGEGMLKGSARSVPGFHIRDALDAVATRQPQLISKFGG
HAMAAGLSLPEANFPAFAQAFDEEVRRQLQEDDLTGRLLTDGSLAVEEFHLELARALRHA
GPWGQHFPEPLFHGVFQLAEQRVVGERHLKVVLKSECGSVKLDGIAFGIDRDVWPNPTVR
WVELAYKLDVNEFRGQETVQLLIAHMEPR
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgcgtatcgaaccgcgtcaactgcctgccatcctgccgtttctcggtgaccttccgccc
ttgctcacccgcttgtacgcagcgcgcggggtgcagtcggaggccgagctggacaagagc
ctggcgcggctgatcccgtaccagcagctcaaaggcatcgacgcggccgtggacctgctg
gtggacgccctggcccagcgccagcgcatcctcatcgttggcgacttcgatgccgatggc
gccaccgccagcagtgttggcgtgctgggcctgcgcctgttgggcgcggcccatgtcgac
tacctggtgcccaaccggttcgaatacggctatggcctgacgccggaaatcgtcgccgtg
gccctgcagcgccagcccgacctgctggtgaccgtggacaacggtatttccagtgtcgac
ggcgtcgccgctgccaaggccgcgggcctcaaggtactggtcaccgaccaccacttgcca
ggccccgaattaccggccgctgatgccatcgtcaatcccaaccagcctggctgcgagttt
cccagcaagtcgctggccggtgtcggggttattttctatgtgctgatggccctgcgcgca
cgcctgcgcagcctgggccattacgacagcaagccgcagcccaacatcggcgagctgctc
gacctggtggccttgggcagcgtcgccgacgtggtgccgctggacgccaacaatcgcatc
ctggtgcaccagggcctggagcgcattcgtgccggccgcgcccgtccgggcttgaaggcg
attctggaggtggccaagcgcgatcaccggcgcatcacctccactgacctggggttcatc
ctcggcccgcgcctgaacgctgccggccgcctggatgacatgagcctgggcatcgaatgc
ctgctcagtgacgacattggcctggcccaggccatggccgcgcaactggacgagctgaac
caggaccgcaagtccatcgagcaaggcatgcagcgcgaggccctggcccagctcaaggac
ttgcccctggaggatatgccgttcggcctgtgcctgttcgacgccgactggcaccagggt
gtgattggtatcctggcctcgcggctcaaggagcgctaccaccggcccaccattgccttt
gccgatgcgggcgaaggcatgctcaagggctcggcgcgctcggtacccggcttccatatc
cgcgatgcgctggacgccgtggcgacgcgccagccgcaactgatcagcaagttcggtggc
catgccatggccgcgggcctgtccctgcccgaagccaacttcccggcgtttgcccaagcc
ttcgacgaagaagtacgccgccagttgcaagaggacgacctcaccggccgcctgctgacc
gacggcagcctggccgtggaagagtttcatctggaactggcccgcgccctgcgtcacgcc
gggccctggggccagcacttccccgagccgctatttcacggcgtgttccagttggccgag
caacgagtcgtgggcgagcggcacctgaaggtggtgctcaagagcgagtgcggctccgtt
aagcttgatggcatagcctttggcatcgaccgcgacgtgtggcccaaccccaccgtgcgc
tgggtggagctggcctacaagctggacgtcaacgagttccgtggccaggaaacggtgcag
ctgctgatcgcccacatggagccgcgttga
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