Pseudomonas silvicola: LZ023_33705
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Entry
LZ023_33705 CDS
T10729
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
psiv Pseudomonas silvicola
Pathway
psiv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psiv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LZ023_33705 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psiv03019
]
LZ023_33705 (rhlB)
Enzymes [BR:
psiv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LZ023_33705 (rhlB)
Messenger RNA biogenesis [BR:
psiv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LZ023_33705 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
WAH57858
LinkDB
All DBs
Position
7424816..7426282
Genome browser
AA seq
488 aa
AA seq
DB search
MLKALKNLFGKSEAEPLAAEMTAPVAPSPARETAIPQPPEPELPAPVAPVAAREAAAAAH
QPLREAERVKPSPRERKPKPARALWKLEDFKVEPQEGKTRFHDFKLSADLMHAIHDLGFP
YCTPIQAQVLGFTLKGKDAIGRAQTGTGKTAAFLISIITQLQQTPPPKERYMGEPRALII
APTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARHCDILVATPGRLLDFN
QRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSATFTEDVMNLA
KQWTTDPAIVEIEPENVASETVEQHVYAVAGSDKYKLLYNLVNDNGWERVMVFANRKDEV
RRIEEKLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVI
NFTLPEDPDDYVHRIGRTGRAGANGVSISFAGEDDSYQLPSIEALLGRKISCEMPPTELL
RPVQRKHS
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
gtgctcaaagcactcaagaacctgttcggaaaaagcgaggctgagccgctcgcagccgaa
atgactgctcctgtggcaccgagccccgctcgggaaacggccatcccccaaccgccagag
cctgaactgccggcccctgtggcaccggtggcagctagggaagcagccgccgctgcccac
cagccactcagggaagccgagcgggtcaagccctcccctcgcgagcgcaagcccaagcct
gcgcgcgccctgtggaaactggaagacttcaaggtcgagccgcaggaaggcaagacccgg
ttccatgacttcaagctctccgccgacctgatgcatgcgattcatgacctggggttcccc
tactgcacgccgatccaggcgcaggtgctgggctttaccctcaagggcaaggacgcgatc
ggccgggcccagaccggtaccggcaagaccgccgcgttcctgatctcgatcatcacccag
ttgcagcagaccccaccgcccaaggaacgctacatgggcgagccgcgggcattgatcatc
gccccaacccgcgaactggtggtgcagatcgccaaggacgccgcggcgttgaccaagtac
accggccttaacgtgatgaccttcgtcggcggcatggacttcgacaagcagctcaagcaa
ctggaagcccgccactgcgacatcctggtcgctacccctggccgcctgctggacttcaac
cagcgcggcgaggtgcacctggacatggtcgaagtgatggtgctggacgaagccgaccgc
atgctggacatgggcttcattccccaggtgcgccagatcattcgccagaccccgccgaaa
agcgaacgccagaccttgctgttctccgccaccttcaccgaagacgtgatgaacctggcc
aagcaatggaccaccgacccggccatcgtcgagatcgagccggagaacgtcgccagcgaa
accgtggagcagcacgtctacgccgtggccggcagtgacaagtacaagctgctgtacaac
ctggtcaacgacaatggctgggagcgggtgatggtgttcgccaaccgcaaggacgaggta
cggcgcatcgaggaaaaactggtgcgcgatggcgtcaatgccgcgcagctgtcaggcgac
gtgccgcagcacaagcgcatcaagaccctggaaggtttccgcgaaggcaagatccgcgtg
ctggtggccaccgacgtggccggccgtggcatccacatcgacggcatcagccatgtgatc
aacttcaccctgccggaagatccggacgactacgtgcaccgcattggtcgcaccggccgc
gcgggggcgaacggtgtgtcgatcagctttgccggcgaggacgactcctatcagctgccg
tcgatcgaggcgctgctgggccgcaagatcagctgcgagatgccaccgaccgaactgttg
cggccggtgcagcgcaagcattcctga
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integrated database retrieval system
