Pseudomonas silvicola: LZ023_40875
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Entry
LZ023_40875 CDS
T10729
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
psiv Pseudomonas silvicola
Brite
KEGG Orthology (KO) [BR:
psiv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psiv03032
]
LZ023_40875 (topA)
03400 DNA repair and recombination proteins [BR:
psiv03400
]
LZ023_40875 (topA)
Enzymes [BR:
psiv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
LZ023_40875 (topA)
DNA replication proteins [BR:
psiv03032
]
Prokaryotic type
DNA Topoisomerases
LZ023_40875 (topA)
DNA repair and recombination proteins [BR:
psiv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LZ023_40875 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Zn_ribbon_recom
Zn_ribbon_Top1
Motif
Other DBs
NCBI-ProteinID:
WAH62180
LinkDB
All DBs
Position
p2:47117..49162
Genome browser
AA seq
681 aa
AA seq
DB search
MAVLLIVESPAKAKTIEKYLGSGYRVAASVGHIRDLPDRSMGVHAPDFRPDYVYTDRGKE
VVARLQRLASECEGILLASDLDREGEAIAWHLQQVLKLDIKNANRITFNEITKKAIQAAV
QNPRTINLQDVAAQEARRVVDRFIGYMVSPIVAEILGDRTISAGRVQSIAVRLVVDRENE
INGHSVLHHFGVSLRFAGWDAKWQFKELLDGGKHWTDQAFAEKVAAVRNVQVVSCEDSDT
QSSPPAPFSTSTLQAAGSNTLGFNPKKTMELAQKLYEQGAITYMRTDSAALSQDALDAIF
AHGREAGLPMLDAPRVWKDGDDAQGAHEAIRPSQIDVLEAGESEDERKLYRLIWARTVGS
QLQEARFAVRTAVLKAEDIDGKAIQFVARSKKLVHQGWKALTPVDTAMDPDDAAAADKED
GDNQVPLLTPGDYLDANSADLVKGKTNPPGRYTEASLVAELKRRGIGRPSTYGAIIETVT
STRGYLEVSGKKKQLKPTARGNRLINVIRANFKFIEFDFTKILETQLEAIATGKQTYKSL
LGIVHKRLSDEINEFKSKVKVLHPCPKCGRGLLFNPATKKGSAWWNCSAYDPEGEGCDYH
AQDADGEPGKASTGPTMTEYACGSCGKPLVHMVKEATDGEGGWQFFSCSGYKQGCKQSYP
DREGQPDLTAPRIKSKEAMQE
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
gtggccgtacttcttattgtggaatcaccagcgaaagcaaaaaccatcgaaaaatatttg
ggcagcggttatcgggttgctgcaagcgtcggccatattcgtgatttgccggatcgctcc
atgggggtacacgcgccggactttcgcccggactatgtgtataccgaccgggggaaagaa
gttgtcgcgcgcttacaacgactggcatcagaatgcgaaggcatcttgcttgcctctgac
ttggatagggaaggggaggcaattgcgtggcacctacagcaagtgctgaagctcgacatc
aaaaacgccaatcgcattaccttcaacgaaatcacaaagaaagcaattcaggcagctgta
caaaacccgcgcactattaaccttcaagatgtcgccgcacaggaagcgcgccgcgttgtt
gataggttcattgggtatatggtaagtcctatcgtagctgaaatccttggggatcggact
atctcagcaggccgcgttcaatctattgcggtacgcctggtagtcgaccgcgaaaatgaa
atcaatgggcactcagtattgcaccacttcggagtgtcgctgcgatttgcgggttgggac
gccaaatggcaattcaaggaattgctggacggtggcaaacattggaccgaccaggccttt
gctgaaaaagtagccgctgttcgaaacgtccaagtcgtttcgtgcgaagactcggacact
caaagctcgccccccgcgccattcagcacgtctacacttcaagccgccggtagtaacacc
ttggggtttaaccccaagaagactatggaattggctcaaaaactctatgagcaaggcgcg
atcacctatatgcgcaccgacagcgccgcactttcacaagatgcattggacgctatcttt
gctcacgggcgcgaagcaggcttgcccatgctcgatgcgcctagggtatggaaggatggt
gatgacgcgcagggcgcccatgaagccatacgtccatcccaaatagatgttcttgaagct
ggtgaaagcgaagatgagcgaaagctataccggctaatctgggcccgtacagtagggtct
caactccaagaagcacgctttgccgtacgtactgccgtactcaaagctgaggacatcgac
ggcaaggccatccagtttgttgcccgtagcaaaaaacttgtccatcaaggctggaaggca
ctaactcctgttgataccgcaatggatcctgacgacgcagctgccgcagataaggaagat
ggggacaaccaggtgccactccttacaccaggtgactaccttgacgcgaattcggccgac
ctggtgaagggaaagaccaatcctccaggccgctacaccgaagcaagtttggtggcggaa
ttgaagcgccgcggcattggtcgaccgtcgacttacggcgctatcattgaaactgtaaca
agcaccaggggatatctggaagtaagtggcaaaaagaaacaactaaagccaactgcgcgc
ggaaatagactgatcaacgtcatacgcgcaaacttcaaattcattgagtttgactttact
aagatccttgaaactcaacttgaagcaattgccactggcaaacaaacatataagtcactc
ctgggcatcgtgcacaaacgcctaagcgatgaaatcaatgaatttaaatcgaaggtgaaa
gtgctgcacccttgcccgaaatgcggacgcggcctgctgttcaatcctgcgaccaaaaaa
ggctcagcctggtggaattgcagcgcttacgaccctgaaggggagggctgcgattatcat
gcccaggacgcagacggcgagccgggtaaagcctctacggggcccacaatgaccgagtac
gcttgcggcagctgtgggaagcccttggtgcacatggtcaaggaagccacggacggggag
gggggatggcagttcttcagttgttcgggctacaaacaaggctgcaaacagtcatacccc
gacagagaggggcaaccagacctgactgcccctcgtatcaagtcgaaagaggccatgcag
gaatga
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