Stutzerimonas stutzeri DSM 10701: PSJM300_01735
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Entry
PSJM300_01735 CDS
T02182
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
psj
Stutzerimonas stutzeri DSM 10701
Pathway
psj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSJM300_01735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psj03019
]
PSJM300_01735
Enzymes [BR:
psj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PSJM300_01735
Messenger RNA biogenesis [BR:
psj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSJM300_01735
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AFN76427
LinkDB
All DBs
Position
complement(377090..378868)
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AA seq
592 aa
AA seq
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MSFASLGLSEALAGAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL
ELLFPGGHPDREHRYGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPFKSACIFGGVGMN
PQVQAIAKGLDVLVACPGRLLDLANQKAVDLGHVEILVLDEADRMLDMGFIHDVKKVLAK
LPAKRQNLLFSATFSKDITDLAGKLLHEPERIEVTPPNTTVERIEQRVYRLPATHKRALL
AHLISQGAWEQVLVFTRTKHGANRLAEYLEKHGLPAAAIHGNKSQNARTKALADFKANQV
RILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVSPDEEKL
LKGIERMTKQKIADGDLMGFDASTIEAEKPETREPRQPRQARGERKPRGERSKPAEQGEP
KERQGRNRRAKSKAKAPAAAGETGQAITRPPQLPPNRDPEAFLDDELDNFGNRVDYVSPY
QNKQGRGRRPGAPGKPGAAQPRAANGQRGAAGSGKGKRAPDARGGQPRRKNDGGRSAPAS
SVQQEAAVRPPEKKPLIIHKESKIDRLPSAEQLDQLPQRPRGEKPALLTRNR
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagccggtgccgtcgaggctgctggc
tatacccagcctacaccagtgcaacagcgggccattcccgccgtgttgcaaggacgcgac
ctgatggtcgccgcacagacaggcaccggcaagaccggtgggttcgcccttcctgttctc
gaattgctgttccccggcggtcatccggaccgggaacaccgctacggcccgcgccagccg
cgcgtgctggtgctgacgccgacccgcgaactcgcggcgcaggtgcacgacagcttcaag
gtctatgcccgcgacctgccattcaagagcgcctgcatttttggtggcgttgggatgaat
ccacaggtccaggccattgccaagggcctcgacgtactggtggcttgcccgggccgcctg
ctcgatctggccaaccagaaggccgttgatctcggccacgtggaaatcctggttctcgat
gaagccgaccgcatgctcgacatgggcttcatccacgacgtcaagaaggtgctggccaag
ctgcccgccaaacggcagaacctgctgttctcggcgaccttctccaaggacatcaccgac
ctggccggcaagctgctgcatgagccggagcgcatcgaagtgacgccgccgaacaccacg
gtcgagcgcatcgaacaacgcgtctatcgcctgccagcgacgcacaagcgcgcattgctc
gcccacctgatctcccagggcgcctgggagcaggtactggtgttcacacgcaccaagcac
ggcgccaaccgcctggccgagtatctggaaaagcacggcctgccggctgccgcgatccac
ggcaacaagagccagaacgcccgcaccaaggccctcgccgacttcaaggcgaaccaggta
cgcatcctggtggcgaccgatattgccgcccgcggcctggacatcgaccagctgccacac
gtggtcaacttcgagctgcccaacgtcgaggaagactatgtgcaccgcatcggccgtacc
ggccgtgccggacgcagcggcgaagcgatctcgctggtctccccggacgaggagaagctg
ctcaagggcatcgagcgcatgaccaagcagaagatcgccgatggcgacctgatgggcttc
gacgccagcaccatcgaggcggaaaagccggaaacccgcgagccgcgccaaccccgccag
gcacgtggcgaacgcaagccgcgcggcgagcgcagcaagcccgccgaacagggtgagccg
aaagaacgccagggccgtaatcggcgcgccaagagcaaagccaaggcaccggccgcagcc
ggcgagacaggccaggcgatcacccgcccaccgcagctgccgccaaaccgggaccctgaa
gcctttctggacgacgagctggacaatttcggcaaccgcgtcgactacgtcagcccctac
cagaacaagcaaggccgtggccgccgccccggcgccccgggcaaaccaggcgctgcccag
cctcgcgcggcgaacggccaacgcggtgccgccggttcgggcaagggcaagcgcgcacct
gacgcccgcggtgggcagcctcgtcgcaagaacgacggcggccgttccgcgccggcgtcc
agcgtacagcaggaagcagccgtccggcctccggagaagaagccgctgatcatccacaag
gagtcgaagatcgaccgtctgcccagcgccgaacaactggatcagttgccccagcgccca
cgcggcgagaaaccggccctgctgacgcgcaatcgctga
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