Stutzerimonas stutzeri DSM 10701: PSJM300_04495
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Entry
PSJM300_04495 CDS
T02182
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
psj
Stutzerimonas stutzeri DSM 10701
Pathway
psj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSJM300_04495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psj03019
]
PSJM300_04495
Enzymes [BR:
psj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PSJM300_04495
Messenger RNA biogenesis [BR:
psj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSJM300_04495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
DUF6192
Motif
Other DBs
NCBI-ProteinID:
AFN76975
LinkDB
All DBs
Position
complement(996890..998293)
Genome browser
AA seq
467 aa
AA seq
DB search
MLKALKKIFGKDPAEQPGKQAIETPSNMGEEKQPDRFESASRAKSSAASKPRRASKPSAP
PAPAWKLEDFVVEPAEGKTRFHDFKLAPELMHAIQDLGFPYCTPIQAQVLGFTLKGRDAI
GRAQTGTGKTAAFLISTITQLLETPPPKERYMGEPRALIIAPTRELVVQIAKDALGLAKY
TGLNVMSFVGGMDFDKQLKQLESRYCDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADR
MLDMGFIPQVRQIIRQTPPKSERQTLLFSATFTDDVMNLARQWTTDPAIVEIEAQNVASE
TVEQHVYAVAGSDKYKLLYNLIEQNDWTRVMVFANRKDEVRRIEERLTRDGISAVQMSGD
VPQHKRIRALEGFREGKIRVMVATDVAGRGIHVDGISHVINFTLPEVPDDYVHRIGRTGR
AGASGTSISFAGEDDAFALPAIEALLGRKISCETPPAELLTPVPRKH
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
gtgctcaaagcactcaagaaaatctttggcaaggatccggccgaacagccgggcaagcag
gccatcgaaacgccctcgaacatgggcgaagaaaaacagcccgaccgcttcgagtcggcc
tctcgggccaagtcgtcggcggccagcaagccacggcgcgccagcaagccttcggcccca
cccgctcccgcctggaagctggaagacttcgtggtcgaaccggccgaaggcaagacccgt
tttcatgacttcaagctcgccccggaactgatgcacgccatccaggacctgggcttcccc
tactgcacgccgatccaggcgcaggtgctgggcttcaccctcaagggacgcgacgccatt
ggccgcgcgcagaccggcacgggcaagacagcggccttcctgatctcgaccatcacccag
ctgctggaaacgccaccgcccaaggaacgctacatgggcgagccgcgcgcgctgatcatc
gcgccgacccgcgagctggtggtgcagatcgccaaggatgcgctggggctggccaaatac
accggcctgaacgtgatgagcttcgtcggcggcatggacttcgacaaacagctcaagcag
ctggaaagccgctattgcgacatcctggtcgccaccccgggacggttgctggacttcaac
cagcgcggcgacgtgcacctggacatggtcgaggtgatggtcctcgacgaagccgaccgc
atgctcgacatgggcttcattccccaggtccgccagatcattcgtcagacaccgcccaag
agcgaacgccagaccctgctgttctccgccaccttcaccgatgacgtgatgaacctggcc
aggcaatggaccaccgacccggccatcgtcgagatcgaggcgcagaacgtcgccagcgaa
accgtcgagcagcacgtctacgccgtggctggcagcgacaagtacaagctgctgtacaac
ctgatcgagcagaacgactggacacgggtcatggtgttcgccaaccgcaaggatgaagtg
cgccgcatcgaggaacgcctgacacgtgacggcatcagcgccgtgcagatgtccggtgac
gtgccgcagcacaagcgaatccgcgcgctggaaggcttccgcgaaggcaagatccgcgtc
atggtcgcgaccgatgtggccggccgcggcatccacgtcgacggcatcagccacgtgatc
aacttcaccctgcccgaagtgccggacgactacgtacaccgcatcggccgtaccggccgc
gccggcgccagcggcacctccatcagcttcgctggcgaggacgatgccttcgccctgccc
gccatcgaggccctgctgggacgcaagatcagctgcgaaacgcctcccgccgagctgctc
acaccggttccgcgcaagcactga
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