Stutzerimonas stutzeri DSM 10701: PSJM300_05085
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Entry
PSJM300_05085 CDS
T02182
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
psj
Stutzerimonas stutzeri DSM 10701
Brite
KEGG Orthology (KO) [BR:
psj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psj03019
]
PSJM300_05085
Enzymes [BR:
psj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PSJM300_05085
Messenger RNA biogenesis [BR:
psj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PSJM300_05085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
AAA_25
NACHT
T2SSE
HCV_NS5a_C
ABC_tran
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
AFN77093
LinkDB
All DBs
Position
1112454..1116539
Genome browser
AA seq
1361 aa
AA seq
DB search
MTDATPAFDTLHKNLDQAFSADRHRLRRQLHELRKKPDESKLAQWLERFQASAAKVETRR
QSVPTIRYDDALPIAAKRDEIKAALEKHQVLVIAGETGSGKTTQLPKICLEIGRGVHGLI
GHTQPRRLAARSVASRVAEEIGAPLGELVGYQVRFEDQSTERTLIKLMTDGILLAETQHD
RFLEKYDTLIVDEAHERSLNIDFLLGFLKTLLPRRPDLKVIITSATIDLERFSKHFNDAP
IIEVSGRTYPVETWYRPLAAETDEDGNRVEDDLTVDQGILAALDEIETHEKTVGKRPGDV
LVFLPGEREIREAAEMLRKASLRFTEVLPLYARLTPGEQQKIFKPAAGRKIVLATNVAET
SLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGICIRLYS
EEDFLSRPEFTDPEILRTNLAAVILQMLHLRLGDIQDFPFIEPPDGKAISDGFNLLQELS
AVNRENQLTPLGRQLARLPIDPRLGRMMLEAAQQGSLAEVLIVASALSVQDVRERPADRQ
QQADQAHAQWKDPDSDFAALINLWRGFEEKRQELGSNPLRSWCRKNFLNYLRLREWRDAH
RQLTLIARELKLGAGKAVDGSGHPPYAKSGSRRVEDGEASSTRSPEAASQLAPTKDTKVN
VILRQQAEASEAAQKAKSYAAVHKAILAGLLSQIGHKTEEGDFLGARQRRFWIHPSSVIG
RKKPSWIMAAELVETTKLFARMVAKIEPDWIEPLAGHLIKKNHFEPHWEKKRGQVVAYEQ
VTLYGLIVVGKRPVHYGPVDPLAARELFIREGLVRGEINSRARALSANRQLLERMDELEA
KARRRDILADEETLYAYYEARLPADIYQTASFENWYKRESQKNPQLLVMREEDVLARDAR
EVTAAQYPDTLRIGELQLPLDYHFEPNHPRDGVTLRVPAPLLPQLRAERLDWLVPGLIEA
KAVALVRNLPKAIRKNFVPVPDFVGAALGKITFGDGALPEALGRELLRMTGARVPDEAWS
EAAAGLDNHLKMNIEVVDARGKFLGEGRDLAELTARFNEASQAALVPAQRKAEQKPVEAR
GFAEVAETAQQKVAGLSMTVYPALVEEGGVVKEGRFPTQAEAEYQHRRALQRLLLQQLAE
PAKYLRSKLPGLTELGLLYRDMGKVDALVEDILLASLDSCILDGETPLPRDGAALASLAE
KRRGDWSAHAERLARLVLDILKHWHGLQKRFKGRIDLAQVVALNDIKAQLGNLVYPGFIR
ETPAQWLREYPRYLKAIEQRFEKIGAQLQRDRVWSGELAGYWEQYQVRLKKHQQEGKRDP
ELIQYRWMLEEYRVSLWAQQLGTKRPVSDKRLNKQWSQVEP
NT seq
4086 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgcaacgcccgccttcgataccctgcacaagaacctcgaccaggccttcagc
gccgaccggcatcgcctgcgccggcagctgcacgagctgaggaaaaaaccggacgagagc
aaactcgcccagtggctcgagcgcttccaggcttcggcggccaaggtcgagacgcgccgg
cagagcgtgccgaccatccgctacgacgatgctctgccgatcgccgccaagcgcgacgag
atcaaggcggcgctggagaagcatcaggtactggtgatcgccggcgagaccggctcgggc
aagaccactcagttgccgaagatctgcctggaaatcggccgtggcgtccacggactgatc
ggccacacccaaccccgtcgcctcgccgcgcgcagcgtcgccagccgcgtggccgaggaa
atcggcgcgccgctgggcgagctggtcggctatcaggtgcgcttcgaggaccagagcacc
gagcgcacgctgatcaagctgatgaccgacggcatcctgctggcggagacccagcacgat
cgcttcctggagaagtacgacaccctcatcgtcgacgaggcccacgagcgctcgctgaac
atcgacttcctgctgggcttcctcaagacgctgctgccgcgccggcctgatctgaaagtc
atcatcacttcggcgaccatcgaccttgagcgcttctcgaaacatttcaatgatgccccg
atcatcgaagtctccggccgcacctacccggtggaaacctggtaccggccgctggctgcc
gagaccgacgaggatggcaaccgcgtcgaggacgatctgactgtcgatcagggcattctc
gccgcgctggatgaaatcgaaacccacgagaaaaccgtcggcaagcgccccggcgacgtg
ctggtgttcctgcccggcgagcgggaaatccgcgaggccgccgagatgctgcgcaaggcc
agcctgcgcttcaccgaggtgctgccgctgtatgcgcgcctgacgccgggcgagcagcag
aaaatcttcaagcccgccgctggccgcaagatcgtgctggccaccaacgtcgcggaaacc
tcgctcaccgtaccgggcatccgctacgtgatcgactccggcaccgcgcgcatcagccgc
tacagctaccgcgccaaggtccagcggctgcccatcgaggcggtgtcccaggccagcgcc
aaccagcgcaagggccgctgtggacgggtcgagccgggtatctgcattcgcctgtacagc
gaggaggattttctctcccgcccggagttcaccgacccggaaatcctgcgcaccaacctt
gcggcggtgatcctgcagatgctgcacctgcgcctgggcgacatacaggatttccccttc
atcgagccgccggacggcaaggccatcagcgacggcttcaacctgttgcaggagctttcg
gcggtcaaccgcgagaaccagctgacgccgctcggccggcagctggcgcgcctgcccatc
gacccgcggctgggccgcatgatgctggaagcggcgcagcagggcagcctggccgaggtg
ctgatcgtcgccagcgcgctctcggtgcaggacgtgcgcgagcgtccggccgatcgccag
cagcaggccgatcaggcgcacgcgcagtggaaggaccccgattcggacttcgccgcgctg
atcaacctctggcgcggtttcgaggagaagcgccaggagctgggctccaatccgctgcgt
agctggtgccggaagaatttcctcaactatctgcgtctgcgtgaatggcgcgatgcccat
cgccagctcaccctgatcgcccgtgagctcaaactgggcgcgggcaaggcggtggatggc
tccggccatcccccctacgcaaaatccggttcccgtagggtggaagacggcgaagcctct
tccacgcgttcgcccgaggccgcctcccaactcgccccaaccaaagacaccaaggtcaac
gtcatcctccgccagcaggccgaagccagcgaggccgcgcagaaggccaagagctacgcc
gcggtgcacaaggccattcttgccggcctgctcagccagatcggccacaagaccgaggag
ggcgacttcctcggtgcgcgccagcggcgcttctggattcatccctccagcgtgatcggc
cgcaagaagcccagttggatcatggccgccgagctggtggagaccaccaagctgttcgcc
cgcatggtggcgaagatcgagccggactggatcgagccgctggccgggcacctgatcaag
aagaaccacttcgagccgcactgggagaagaagcgtggtcaggtggtggcctatgagcag
gtcacgctctacggactgatcgtggtgggcaagcgcccggtgcactacggcccggtcgat
ccgctggcggcacgcgagctgttcatccgcgagggtctggtgcgcggcgagatcaacagc
cgcgcccgggcgctgtcggccaaccgccaactgctcgagcgcatggatgagctggaagcc
aaggcgcgccgccgcgacattctcgccgacgaggaaaccctctacgcctactacgaagcg
cgcctgccggcggatatctaccagaccgccagcttcgagaactggtacaagcgcgagagc
cagaagaacccgcagttgctggtcatgcgcgaggaagacgtgctggcccgcgatgctcgc
gaagtcactgccgcgcagtaccccgacaccctgcgcatcggcgagctgcagttgccgctg
gactatcacttcgagcccaaccacccgcgcgacggtgtgaccctgcgcgtgccggcgccg
ctgctgccgcagctgcgcgccgagcggctcgactggctggtgccgggcctgatcgaggcc
aaggccgtggcgctggtgcgcaacctgcccaaggcgatccgcaagaacttcgtgccggtg
ccggatttcgtcggtgcggcgctgggcaagatcacttttggcgacggcgcgctgcctgag
gcgctcggtcgcgaactgctgcgcatgaccggcgcccgtgtgccggacgaagcctggtcc
gaagccgccgccgggctcgataaccacctgaagatgaacatcgaggtggtcgacgcccgt
ggcaagttcctcggcgaaggacgtgatcttgccgaactcaccgcacgcttcaatgaggcc
agccaggctgcactggtaccggcgcaacggaaggctgagcagaagccggtcgaggccagg
ggcttcgccgaggtcgccgaaacggcgcagcagaaggtcgccgggctgtccatgacggtc
tatccggcactggtggaagaggggggcgtcgtcaaggaaggacgcttcccgacccaggcc
gaagccgaataccagcaccgccgtgcgctgcagcgcctgctgctgcagcaactggccgag
ccggcgaaatacctgcgcagcaagctgccaggacttaccgaactgggactgctctatcgc
gacatgggcaaggtcgatgcgctggtcgaggacatcctgctggcgagcctggacagctgc
attctcgatggcgaaaccccgttgccgcgcgacggcgccgccctggcttcgctggctgag
aaaaggcgcggcgactggtccgcccacgccgagcgcctggcgcgcctggtgttggacatc
ctcaaacactggcacggcctgcagaaacgcttcaagggccgcatcgacctggcccaggtg
gtggcgctcaacgatatcaaggcgcagctcggcaatctcgtctatcccggcttcatccgc
gaaacaccggcgcagtggctcagggaatacccgcgctacctcaaggctatcgaacagcgc
ttcgagaagatcggcgcccaactgcagcgtgatcgggtatggtccggcgagttggctggg
tattgggagcagtatcaggtccggctgaagaagcaccagcaggaaggcaagcgcgatccg
gagctgatccagtaccgctggatgctggaggaataccgcgtctcgctctgggcgcagcag
ctcgggacgaagaggccggtatcggacaagcggctgaacaagcagtggagtcaggtcgag
ccttag
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integrated database retrieval system
