Stutzerimonas stutzeri DSM 10701: PSJM300_06250
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Entry
PSJM300_06250 CDS
T02182
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
psj
Stutzerimonas stutzeri DSM 10701
Brite
KEGG Orthology (KO) [BR:
psj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
psj03016
]
PSJM300_06250
Enzymes [BR:
psj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
PSJM300_06250
Transfer RNA biogenesis [BR:
psj03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
PSJM300_06250
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
DUF6504
Motif
Other DBs
NCBI-ProteinID:
AFN77324
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All DBs
Position
1348008..1349132
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AA seq
374 aa
AA seq
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MAIETQWVRDDAHLARLCAEWRQLPYVAMDTEFMRVDTFYPIAALLQVGDGRCAYLIDPL
TITDWSAFAALLEDQDVVKVLHACSEDLEVFLRLTGSLPAPLFDTQLAAGYLNIGFSMGY
SRLVQSVLGLELPKGETRSDWLQRPLSEMQVRYAAEDAQHLAELYEALLPRLDENKRSWI
LEDGAELVAGFRCELDPDEAYRDVKQAWRLKPQQLAVLKVLAAWRERQARARNQPRNRVL
REHSLWPLARTQPGDLLTLARIEDMHPRTVRQDGEALLALIREAAATPAQDWPEPLPEPL
PLEASSRLKKLRAVGQREGAALGIAPELMLRKKVLEALLKTGYPDGPYHLPDSLRGWRRA
RMGQALLDVLENKS
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
ttggccatcgaaactcaatgggtccgcgatgatgcgcatctggcccgcctgtgtgccgag
tggcgccagctgccttatgtcgccatggataccgaattcatgcgggtcgacaccttctac
ccgatcgccgcgctgctgcaggtgggcgatgggcgctgtgcctatctgatcgatccgctg
accatcaccgactggagcgctttcgcagccctgctggaagatcaggacgtggtgaaggta
ttgcacgcctgcagcgaggatctggaagtgttcctgcgcctcaccggcagcctgccggcg
ccgctgttcgatacccagttggcggccggttatctgaacatcggtttttccatgggttat
tcgcgactggtgcagagcgtgctgggcctcgaactgcccaagggcgagacccgctccgat
tggctccagcgccccttgagcgaaatgcaggtgcgttatgccgccgaggacgctcagcat
ctggccgagctgtacgaagccttgctgccgcggctggatgagaacaagcgcagctggatt
ctcgaagatggcgccgaactggttgccggctttcgctgcgagctcgatccggacgaagcc
tatcgtgacgtcaagcaggcctggcgcctgaagccgcagcagctcgccgtgctcaaggtg
ctcgccgcctggcgcgagcgtcaggcccgggcgcgcaatcaaccacgcaacagggtgctg
cgcgaacacagcctgtggccgttggcacgcacccagcctggcgatttgctgacgctggcc
cgtatcgaagacatgcatccgcgcaccgtgcgccaggatggcgaagccctgctggcgctg
atccgcgaagccgcagccacgcccgcgcaggactggccggagccgctgcccgagccgctg
ccgctggaggcatcctcgcggctcaagaagctgcgggcggtcggtcagcgcgaaggtgcc
gccttgggcatcgcgccggagctgatgctgcgcaagaaggtgctcgaagccctgctgaag
accggctatcccgacggcccctatcacttgcccgactcgctgcgcggctggcggcgggcc
cgtatggggcaggccctgctcgatgttctggaaaacaaatcatga
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