Stutzerimonas stutzeri DSM 10701: PSJM300_10475
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Entry
PSJM300_10475 CDS
T02182
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
psj
Stutzerimonas stutzeri DSM 10701
Pathway
psj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSJM300_10475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psj03019
]
PSJM300_10475
03400 DNA repair and recombination proteins [BR:
psj03400
]
PSJM300_10475
Enzymes [BR:
psj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PSJM300_10475
Messenger RNA biogenesis [BR:
psj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSJM300_10475
DNA repair and recombination proteins [BR:
psj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PSJM300_10475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
DEAD
AAA_19
Helicase_C
UvrD_C
UvrD_C_2
ResIII
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
AFN78161
LinkDB
All DBs
Position
complement(2292255..2297372)
Genome browser
AA seq
1705 aa
AA seq
DB search
MASPSQPKSLIFDLEVAPGTAGQPDRIFMVGALRPDTGEELERKVDKDLPSVLDALDSLG
QGASFVLGHNVIDHDLPILKQQAPQLALHQLPVIDTLRLSPLAFPQNPYHRLVKDYKLIR
DSLNSPLSDCRSTLTLFNDQRQAFTELNTSHQAELLCYQTLLAPTLKSDLGSLFASITGQ
APKRLTELRSLIPELLKETDPTLSRPLKVCSTRLEQLLETDLLDESLHWPLAYALAWLRV
SGGNSVLAPWVRHQFPEVGRLIAELRDTPCGQAHCGYCSTTHDPRHELKRYFGFDDFRTE
PDGRTLQHDVVLAGMQGKHVLAILATGGGKSLCYQLPALNRFHRNGSLTVIISPLQSLMK
DQVDGLLARNVQCAATLNGLLTMPERAEVLEKIQLGDVGILLVSPEQFRNKAFRRAIAQR
QVGAWIFDEAHCLSKWGADFRPDYLYVSRFIKQFTGDGALAAIGCFTATAKPDVLEDIEQ
HFKDQLDITFERFIGTHERTNLHFEVLPCARAEKRHHTQALLEDELGRNEGGAVVFVSSR
KGAEELADFLIGHGWACKYFHAGLEPHEKKDIQDAFKSGELKIIVATNAFGMGVDKSDIR
LVVHADIPGSLENYLQEAGRAGRDQGEARCVLLYDAQDIENQFGMCEGSKLTLRDIQQIL
RKLRKESERRKGGKVVITAGEVLMDEQVETSFEAGERDAETKVVTAVAWLERGLFLRREE
NQTQIFPASLKLSKEEADKRLANAKLPARRLEEFKAILSFLYDASADERINTDALMALTS
LTSEEVTATLRQMEDLGLLVNDSKLTLYVRHGVVGPSTQRLQATLELESALFDLLKEQAP
DAESGEWQDLNLPLLTAALKTATGNADLIPLHVLRLLRSLAQDHDSETQLRSSFELRQIS
QDFLKLRIRGGYNWRGIQGLGERRRALAAVVLPFLIGKLPPGSRSKDLLVDTTFGELMDL
IDQDLELRSRIEAPQRRRAIEHVLLYLHKQDVLTLNHGMTVMRRAMTIEVEPDKRTGYLK
DDYQRLDEHYREKRIQVHVMREYAEVALGSMREARDLVKHYFTLAKQEFIRRYFAGREEV
LKLATSEESWRSIVEKLSAAQRVIVDDNDDVNRLVLAGPGSGKTRVIVHRIAYLLRVRRV
PARCIVALTFNRHAANEIKQRLLRLVGPDAFGVNVMTYHRMAMRLTGTRFERGETVEEGR
LAQVMSEAVELLEGKRQVEGEDDLREQLMRGYRYILVDEYQDIDDLQYRLVGALAGRKAD
EEGRLCILAVGDDDQNIYAWRDTNNRYIERFCEDYSAAKSYLIDNYRSSARIIEAANSVI
GRNPDRLKQDHPIQIDTARRERPKGGDWETLDSERAGRVLRLRIEAEDDARANVQAQAAM
AELQRLLKLDTEDWQGCAVLARTHQYLLPVQAWCEAHGVPYCLAADKESALPLTAQRGFV
RAVEGLRAITEPVSAAIAWTRLSEAGLAPDWYGFFMTAFDQLTAEFGQCPLAAHSLIDWL
YDYARELRQQPKQGLYLGTVHSAKGLEFRHVVVLDGGWSTQPDTLSDERRLYYVGMTRAE
QTLTLCEFPGGNPFARSLADEVMGKRFVGEPMPELDKRYLQLSLKDIDLDFAGRQPQNSA
VHNALASLEPGDPLTIQPQDDRYLILDAHDRIVGRTAKSFKLDLDVEHCEVAAILVRHTA
RCEEQYRAWHKSEQWELVVPRVVGV
NT seq
5118 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaccgtctcaacccaaaagcctgatcttcgatctggaagttgcacccggtaca
gcgggccaacccgaccgcatcttcatggtcggtgccctgcgccccgacacgggcgaggaa
ctcgaacgcaaggtcgacaaggacctgcccagcgtcctcgatgccctggacagcctgggg
cagggcgcaagcttcgtgctcggccacaacgtcatcgaccatgacctgccgatcctcaaa
cagcaggcgccccagcttgctctgcaccagctcccggtgatcgacaccctgcgcctgtca
cccctggcctttccgcagaacccgtatcaccgcctggtcaaggactacaaactcattcgt
gacagcctcaactcaccgctgtcggactgccggtccacgctcaccctgttcaacgatcaa
cgtcaggcctttaccgagctcaacacgagccaccaagccgaactcctgtgttaccagacg
ctgctggccccaacgctcaaaagcgacctgggctcactctttgcctcgatcaccggccag
gcacccaagcgcctcaccgaactgcgcagcctcatccccgagctgctcaaagaaaccgac
ccgaccctgagccgtcccctcaaggtctgcagcacccgcctggaacagctgctcgaaacc
gacctgctggacgagtcgctgcactggcctctggcctatgcattggcctggctgcgtgta
tcgggcggcaactcggtgctagcgccctgggtgcgtcatcagtttccggaagtcggacgg
ctgattgccgagctgcgcgacacgccctgcggccaagcgcactgcggctactgcagcacc
acccatgacccgcgccacgagctcaagcgttacttcggcttcgatgattttcggaccgaa
cccgacggccgcaccctgcagcacgacgtggtgctggccggcatgcaaggcaagcacgtg
ctggccattctggcgacggggggtggcaagtcgctgtgctaccagctaccggccctgaac
cgttttcaccgcaacggcagccttacggtgatcatctcgccgctgcagtcgttgatgaag
gaccaggtcgatggcctgctggcccgcaacgtccagtgcgccgccactctcaatggcctc
ttaaccatgcccgagcgggccgaggtgctggagaagattcagctgggtgacgttgggatt
ctgttggtctcacccgagcagtttcgcaacaaggcctttcgccgggccattgcccagcgc
caggtcggtgcctggatattcgacgaggcccactgcctgtccaaatggggcgccgacttt
cgcccggactacctttacgtctcgcgcttcatcaagcagttcaccggtgacggcgcgctg
gccgccatcggctgcttcaccgccacggccaagcccgatgtgctggaagacatcgagcag
cacttcaaggatcagctcgacatcaccttcgagcgcttcatcgggacccatgagcgcacc
aacctgcacttcgaagtactgccttgcgcccgggccgagaagcgccaccacacccaggcg
ctgctcgaggacgaactgggtcggaacgagggcggggcagtggtcttcgtctccagccgc
aagggcgccgaggaactggccgacttcctgattggccatggctgggcctgtaagtacttt
catgccgggctcgagccccacgagaaaaaggacattcaggacgcgttcaagagcggcgag
ctcaagatcatcgtggccaccaatgcctttggcatgggcgtggacaagtccgacattcgc
ctggtggtgcatgccgacattccaggctcgctggaaaactacctgcaggaagccggccgg
gcggggcgcgaccagggcgaggcgcgctgcgtgctgctgtacgacgcccaggacatcgaa
aaccagttcggcatgtgcgagggctcgaaactgaccctgcgcgacattcagcagatcctg
cgcaaactgcgcaaggagagcgagcggcgcaagggcggcaaggtcgtcatcaccgcgggc
gaagtgctgatggacgagcaggtcgagaccagcttcgaagccggcgagcgcgacgccgaa
acgaaggtcgtcaccgccgtggcctggctcgaacgcggactgttcctaaggcgtgaggaa
aaccagacccagatcttcccggcgagcctgaaactgtccaaggaggaggccgacaagcgc
ctggccaatgccaagctaccggcccgaaggctggaggaattcaaagcgattctgagtttt
ctctacgacgcgagcgcggacgagcgcatcaacaccgatgccctgatggccctgaccagc
ctcacctctgaagaggtcaccgcgaccctgcggcagatggaagacctcggcctgctggtc
aacgattccaagcttaccctctacgtgcgccacggcgtggtcggaccgtccactcagcgt
ttgcaagcgaccctggagctcgagtcggcgctcttcgatctgctgaaggagcaggcgccc
gacgccgagagcggcgagtggcaggatctgaacctgccgctgctgaccgcagcgctcaag
acggccaccggtaatgcggacctcatcccgctgcacgtgctgcgtctgctccggagcctg
gcccaggaccacgacagcgagacgcaactgcgcagcagtttcgagctgcgccagatcagc
caggactttcttaagttgcgcatccgcggcggttataactggcggggcattcaagggctg
ggggagcgccgtcgtgccctggccgcggtcgtgctgccgtttctgatcggcaagctgccg
ccgggctcgcgcagcaaggatctgttggtcgacaccacgttcggtgaactcatggacctg
atcgaccaggacctcgaactgcgctcccgcatcgaagcgccacaacgccgccgagccatt
gagcacgtgctgctctatctgcacaaacaagacgtactgaccctcaaccacggcatgacg
gtgatgcgccgggccatgaccatcgaagtcgagccggacaagcgcaccgggtacctcaaa
gacgattaccagcgcctggatgagcattaccgcgagaagcgcattcaggtgcacgtgatg
cgcgagtatgccgaggttgcactgggctcgatgcgcgaagcccgcgacctggtgaagcac
tacttcaccctggccaagcaggagttcattcggcgctacttcgctggccgcgaggaggtg
ctcaaactcgctaccagcgaggagtcctggcgcagcatcgtcgagaaattgagcgccgcc
cagcgggtgattgtcgatgacaacgatgacgtcaaccgcctggtgctggccggccccggc
tcgggcaagacacgggtcatcgttcaccgcattgcctatctgctacgcgtgcgacgcgta
ccggcgcgctgcatcgtggccctgaccttcaaccggcatgcggccaacgagatcaagcag
cgcttgctgaggctggtgggccccgatgcgttcggggtcaacgtcatgacctatcaccgc
atggccatgcgtctgaccggcacccggttcgagcgcggcgagacggtcgaggaggggcga
ctggcccaggtgatgagcgaggccgtcgagctgctcgaaggcaagcgccaagtcgaaggc
gaagacgacctgcgcgaacaactgatgcgcggataccgctacattttggtcgacgagtac
caggacatcgacgacctgcagtaccgcctggtcggtgccctggcagggcgtaaggctgat
gaagaggggcgcctgtgcatcctggcggtgggcgacgacgaccagaacatctacgcctgg
cgtgacaccaacaaccgctacatcgagcgcttttgtgaagactactcggccgctaaaagc
tatctgatcgataactaccgctccagcgcccggatcatcgaagccgctaacagcgtcatt
ggccgtaacccggatcgcctgaagcaggatcacccgatccagatcgacacggcacgacgt
gaacggcccaaaggtggcgactgggagactctggattcggagcgggcagggcgggtgttg
cgcctgaggatcgaagccgaagacgacgcgcgcgccaatgttcaggcccaggcggcaatg
gccgagctgcaacggctgcttaaactggacaccgaggattggcagggctgcgccgtgctg
gcccgcactcaccagtatctactgccggttcaagcttggtgcgaggcacatggcgtgccg
tattgtctggccgcagacaaagagagtgcattgccactcacggcccagcggggctttgtg
cgcgcggtcgaagggctgcgcgcaatcaccgaaccggtctcggccgctatagcatggaca
cgtctaagcgaggcaggccttgccccggattggtacggcttcttcatgaccgcattcgat
cagctcaccgccgagtttgggcaatgcccgctcgccgcccactcgctgatcgactggcta
tacgactacgcccgcgagctgcgccagcaacccaagcaggggctgtacctgggcacggtg
cactcggccaaggggctggaatttcgccatgtcgtggtcctggatggcggatggtctacc
cagcccgacaccctcagcgatgagcgccggctttattacgtcggtatgacccgtgccgag
cagacgctgaccctatgtgaattcccaggcggcaacccgttcgcaagaagcctggccgac
gaagtgatgggaaagcggtttgtcggcgagcccatgcctgaactcgacaagcgctacctg
cagctgtcgctcaaggacatcgatctggacttcgcggggcgccagccacagaactcggcg
gtccacaacgcactggcgagcctggaaccaggcgatccgctcacaatccagccacaggac
gaccgctacctcattctggacgcccacgatcgaatcgtcggccgcaccgccaagtccttc
aagctcgacctggatgtcgagcattgcgaggtagcggcgattctggtccgccacaccgct
cggtgcgaagagcagtacagggcttggcataaatctgagcagtgggaactggtggtgccg
agggttgtgggtgtttga
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integrated database retrieval system
