Stutzerimonas stutzeri DSM 10701: PSJM300_12695
Help
Entry
PSJM300_12695 CDS
T02182
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
psj
Stutzerimonas stutzeri DSM 10701
Pathway
psj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSJM300_12695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psj03019
]
PSJM300_12695
03009 Ribosome biogenesis [BR:
psj03009
]
PSJM300_12695
Enzymes [BR:
psj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PSJM300_12695
Messenger RNA biogenesis [BR:
psj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PSJM300_12695
Ribosome biogenesis [BR:
psj03009
]
Prokaryotic type
rRNA processing factors
PSJM300_12695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
AFN78601
LinkDB
All DBs
Position
complement(2795707..2798751)
Genome browser
AA seq
1014 aa
AA seq
DB search
MRVALVDGQRLFDLDIESGAREQKKANIYKGKITRVEPSLEAAFVDFGSDRHGFLPLKEI
SREYFKKTPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPR
AGGISRRIEGEERNELREALNGLNIPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWSAVK
EASAERQAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQNEALSFIQQVMPQYASKI
KLYEDSVPLFNRFQIESQIETAFQREVKLPSGGSLVIDPTEALVSIDINSARATKGGDIE
ETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKMREALEADRARIQV
GRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLAILRLIEEEALKDRT
AEVRARVPFQVAAFLLNEKRNAITKIELRTRARIFILPDEHLETPHFEVQRLRDDSPEIM
AGQASYEMSHTEAEDVQPAASTRTLVRQEAAVKTAPQRTAPAPTPAPTASSAAPAAQEPS
LFKGLVKSLVGLFAGKAEAPAAEVEKKTSSSSRAPRNDERRSGRQQNRRRDTRGARDEER
KPREERAPRAERQPREERAPREERQPRQREERKPREQLETNDAQPQARRERAPREERQPR
EERKRELRAPLDEVVDNAQAPSEESVERKPRQPREERKPRNEQNLNEEVQQTEEAAENAQ
NEQDAAEGGDRPRRRSRGQRRRSNRRDRQRDANGNEIEGENDAEGVTNEVSESNAPVKSE
QVAIAATAAALAANTADTEPANEAPVAEAEPAVQAPAEAIEEAVTAAPAEQAKPEAAAEE
PAAATPAQAPVQEPAPSEPAAETVVAPVAATVEPAVVEPAPVAPVQPAAPAPGLTPSGRA
PNDPREVRRRRREEERLAKEAAEAEAKAAAAVIEAPAEVAQPLASPEIVAGEPAASQAPT
EQPLENTPAASLEEPTAAQTEEQLSEAAASTAQTEPTASQEPEVKADDEENRQR
NT seq
3045 nt
NT seq
+upstream
nt +downstream
nt
ttgcgtgtcgcactggtcgatggtcaacgcctgttcgatctcgatatcgagtccggcgct
cgcgagcagaagaaagccaacatctacaaaggcaagatcactcgcgtcgaacccagcctg
gaagcggccttcgtcgatttcggctccgaccgtcacggcttcctccccctcaaggaaatt
tcccgcgaatacttcaagaagacacccgaaggtcgcgtgaacatcaaggacgtcctgagc
gaaggccaggaagtcatcgtccaggtcgagaaagaagagcgtggcaacaagggcgcagcc
ctgaccaccttcatcagcctggccggccgttacttggtgctgatgcccaacaaccctcgt
gccggtggcatttcgcggcgtatcgaaggcgaggagcgcaacgaactgcgcgaggcgctg
aacggcctgaacattcccgccgacatgggcctgatcgttcgcaccgccggcctgggccgt
tccagcgaagagatgcagtgggacctcgactacctgctgcagctgtggagcgcagtcaag
gaagcctcggccgagcgccaggcgcccttcctgatctaccaggaatccaatgtcatcatc
cgcgccatccgcgattacctgcgccaggacatcggcgaagtcctgatcgacagcgtggaa
gcccagaacgaagcgctgagcttcatccagcaggtcatgccgcagtacgccagcaagatc
aagctgtacgaagacagcgtaccgctgttcaaccgcttccagatcgagagccagatcgaa
accgccttccagcgcgaagtaaagctgccctccggtggctccctggtcatcgacccgacc
gaagccctggtctccatcgacatcaactcggcacgcgccaccaaaggcggcgacatcgag
gaaaccgcactgcagaccaacctggaagccgccgaggaaatcgcgcgccagttgcgcctg
cgcgacatcggcggcctgatcgtcatcgacttcatcgacatgaccccggccaagaaccag
cgcgccgtggaagagaagatgcgtgaagcgctggaagccgaccgcgcgcgcatccaggtc
ggccgtatctcgcgcttcggcctgctggagatgtcccgccagcgcctgcgtccgtcgctc
ggcgaaaccagcggcatcgtctgcccgcgctgtaacggccagggtatcatccgcgacgtc
gagtcgctgtcactggcgatcctgcgcctgatcgaggaagaagccctcaaggaccgcacc
gccgaagtccgcgcccgcgtgcccttccaggtcgccgccttcctgctcaatgaaaaacgc
aacgccatcaccaagatcgaactgcgcacccgcgcgcggatcttcatcctgccggatgag
catctggaaaccccgcacttcgaagtgcagcgcctgcgtgacgacagcccggaaatcatg
gccggccaagccagctacgagatgagccataccgaagccgaagacgttcaaccggctgcc
tcgacccgcacgctggtacgccaggaagcggccgtgaagaccgcgccacaacgcaccgca
ccggcccctactcccgcgcccactgccagcagcgcagcacctgccgcgcaggaacccagc
ctgttcaagggcctggtcaagtcgctcgtcggcctgttcgccggaaaggcggaagcaccc
gccgcggaagtcgagaagaagacctccagcagcagccgcgcgccgcgtaacgacgaacgc
cgcagcggccgccagcagaaccgccgccgcgatacccgaggcgctcgcgacgaggagcgc
aagccgcgggaagaacgcgcaccgcgcgccgaacgccagccacgtgaggagcgtgccccg
cgcgaggagcgtcagccgcgtcaacgcgaagagcgcaagccacgtgagcagctcgaaacg
aacgacgcccagccacaagcccgccgcgaacgcgcacctcgcgaggagcgtcagccacgc
gaagagcgcaagcgtgaactgcgcgcacccctcgatgaggtcgtcgataacgcacaggcg
ccgagtgaagaaagcgtcgagcgcaagcctcgtcagccgcgtgaagaacgcaagccgcgc
aacgagcagaacctgaacgaagaagtgcagcagacggaagaagcggccgagaacgcgcag
aacgagcaggatgcagccgaaggcggcgatcgtccgcgtcgccgctcgcgtggccagcgt
cgccgcagcaaccgtcgtgatcgtcagcgcgatgccaatggcaacgagatcgaaggcgaa
aacgatgcagaaggcgtgacgaatgaggtcagcgagagcaacgcacccgtgaagtccgag
caggtagccatcgccgcgactgccgcggcgcttgcggccaacacagccgataccgagcca
gccaacgaggccccggtagccgaagccgagccagcggtacaggcaccggccgaggcgatc
gaggaggcggtgacagcagcaccggctgaacaggccaagcctgaagcagcggcagaagaa
cccgccgcagcgaccccggcccaggcaccggtacaagagccggcgccgagcgagcctgca
gccgaaaccgtggtggcgcccgtggctgctactgtcgaacctgccgttgtcgagccggcg
cccgtagcgccagtccaacctgctgctccggcaccgggactgacgccttcgggccgtgcc
ccgaacgatccacgtgaagtgcgtcgccgtcgccgcgaggaagagcgcctggccaaggaa
gccgctgaagccgaggccaaggccgccgctgccgtcatcgaggcgccggccgaggtcgcg
cagccgctggccagtccggaaatcgtcgccggcgagcctgccgccagccaggcgccaacc
gagcagccgctggaaaacactccagctgccagcctggaagagcccaccgctgcgcagacc
gaggaacagctcagcgaggccgcggcatccacggcgcagaccgagccgaccgctagccag
gagcctgaggtgaaggctgacgacgaggagaatcgccagcgctga
DBGET
integrated database retrieval system
