Stutzerimonas stutzeri DSM 10701: PSJM300_16085
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Entry
PSJM300_16085 CDS
T02182
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
psj
Stutzerimonas stutzeri DSM 10701
Pathway
psj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSJM300_16085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psj03019
]
PSJM300_16085
Enzymes [BR:
psj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PSJM300_16085
Messenger RNA biogenesis [BR:
psj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSJM300_16085
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AFN79275
LinkDB
All DBs
Position
complement(3497570..3498895)
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AA seq
441 aa
AA seq
DB search
MTFASLGLIEPLLRTLESLDYTTPTPVQAKAIPAVLKGRDLMAAAQTGTGKTAGFALPLL
QRLTQEGAPVTSNSVRALVLVPTRELAEQVHESFRVYGQNLPLRTYAVYGGVSINPQMMA
LRKGVDVLVATPGRLLDLYRQNAVKFAQVQALVLDEADRMLDLGFSQELTDVFCALPRKR
QTLLFSATFSEPIRQLAGELLRDPLSIEVSPRNTAAKTVKQWLVPVDKKRKSELFLHLLA
EKRWGQVLVFVKTRKGVDELVAQLQAQGIASDAIHGDRPQASRLRALERFKACEVQILVA
TDVAARGLDIHDLPQVVNFDLPIVAEDYVHRIGRTGRAGATGEAISLVAADEVDQLAAIE
TLINQVLPRHDEPGFVPDHRVPVTQPGGQIVKKPKKPKKPKDGAGKGRIHLGNWFDESEK
PNATPVRKVPSLGGARPGKKR
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgactttcgcctccctgggcctgatcgagccgctgctgcgcacgctcgaatccctcgac
tacaccacgccgactccggtccaggccaaggcgattcccgccgtgctcaagggccgcgac
ctgatggcggcggcgcagaccggcaccggcaagaccgccggattcgccttgccgctgctg
cagcgtctgacccaggaaggtgcgccggtgacgagcaattcggtgcgtgcgctggtgctg
gtgccgacccgcgaactggccgagcaggtgcacgagagtttccgcgtttatgggcagaac
ctgccgctgcgcacctacgcggtgtacggcggcgtcagcatcaacccgcagatgatggcg
ttgcgcaagggcgtcgacgtgctggtggccacgcccggtcggttgctcgatctgtaccgg
cagaacgcggtgaagttcgcccaggtgcaggcgctggtgctggacgaggccgaccgcatg
ctcgacctcggtttctcccaggagctgaccgacgtgttctgcgccttgccgcgcaagcgc
cagacgctgctgttttccgcgaccttctccgagcccatccgccagttggccggcgagttg
ctgcgcgacccgctgtccatcgaagtcagcccgcgcaataccgcggccaagacggtcaag
cagtggctggtgccggtggacaagaagcgcaagagcgaactcttcctgcacctgctggcg
gaaaagcgctggggccaagtgctggtgttcgtcaagacgcgcaagggcgtcgacgagctg
gtggcgcagctgcaggcccagggcatcgccagcgacgccatccacggcgaccggccgcag
gcctcgcggctgcgcgcgctggagcgcttcaaggcctgcgaggtgcagatcctggtggct
accgacgtggccgcgcgcgggctggatatccatgacctgccgcaggtggtcaacttcgac
ctgccgatcgtcgccgaggactatgtgcaccgcatcggccgtaccggccgcgccggcgcc
acgggtgaggcgatctcgctggtcgccgccgacgaggtggaccagctcgccgccatcgaa
accctgatcaaccaggtcctgccgcgccatgacgagccaggcttcgtgcccgatcatcgg
gtacctgtcacccagcccggcgggcagatcgtcaagaagccgaagaaacccaagaagccc
aaggacggcgccggcaagggcagaatccacctgggcaactggttcgacgaaagcgaaaaa
cccaacgccacaccggtccgcaaggtgccgagcctgggcggggcaaggccggggaaaaag
cgctga
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