Pseudoalteromonas sp. JSTW: GZH31_01710
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Entry
GZH31_01710 CDS
T10506
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
psjs Pseudoalteromonas sp. JSTW
Pathway
psjs03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psjs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GZH31_01710 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psjs03021
]
GZH31_01710 (rpoC)
03400 DNA repair and recombination proteins [BR:
psjs03400
]
GZH31_01710 (rpoC)
Enzymes [BR:
psjs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GZH31_01710 (rpoC)
Transcription machinery [BR:
psjs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GZH31_01710 (rpoC)
DNA repair and recombination proteins [BR:
psjs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GZH31_01710 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
Peptidase_M23
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
QLJ08606
LinkDB
All DBs
Position
354885..359057
Genome browser
AA seq
1390 aa
AA seq
DB search
MKDLLKFLKQQNKTEEFDAIRIGLASPDMVRSWSYGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFVVTEPGMTTLERGQLLGEEEYLDALEEHGDEFEAKM
GAEAVLDLLRELDLGQLIAEMREELPTINSETKRKKITKRLKLMESFHQSGNNPEWMIMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LKLHQCGLPKKMALELFKPFIYGKLERRGMATTIKAAKKMVEREVAEVWDVLDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIHLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDRINAKGEGAVFKDPKEAEKAYRSG
NAELHARVKVRISETIKNEEGEAVDYVTIVETTVGRAILSLILPKGMPFELINQALGKKQ
ISGLLNECYRRLGLKDTVIFADQVMYTGFHYAMKSGVSIGIDDLVIPPVKAEIIESAEAE
VTEINQQFQSGLVTAGEKYNKVIDIWSRVNENLSREMMANLSKDTVINAKGEEEEQSSFN
SVFMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVINEDDCGTEDGLTMKPLIEGGDVVEALRERVL
GRVVAEDVVIPGTNEVLVERNIMLDEKLCDLLEEHSVDEVRVRSVITCDNDFGVCAKCYG
RDLARGHIINPGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRASAENSVQVKTNGTLKL
HNAKYVLNTDGKIVITSRSTEITIIDSFGREKERYKVPYGAVLTVQDNSEVQGNDIVATW
DPHSHPIVLEHKSKISFSDIDDSNTEAQTDELTGLTRVVVKDLGKVNAKEPKLIIESDER
GLQETRLPSFTTIEVTDGATANPGDVLARIPQEGSKTRDITGGLPRVADLFEARKPKDPA
ILAEITGTISFGKETKGKKRLVITPAEGDAYEEMIPKWRQLNVFEGEQVSKGEVIADGPE
SPHDILRLRGVTHVANYIVNEVQEVYRLQGVKINDKHIETIIRQMLRKCIILDGGDTEFL
AGEQVEVARVNIANRDLEKQGKIPAKFEIQLMGITKASLATESFISAASFQETTRVLTEA
AVNGKSDELRGLKENVIVGRLIPAGTGFAYHQDRLNRRKQGEIIEEQTVSAEEATQALTD
ALNADISGNQ
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttacttaagtttctgaagcaacaaaataagaccgaagaattcgatgcaatt
cgcattggtcttgcttcgccagatatggttcgttcatggtcatacggtgaagtaaagaaa
cctgagacaatcaactaccgtactttcaagcctgagcgcgacggcttattctgtgcccgt
atcttcggcccagtgaaagattatgagtgtttatgtggtaaatataagcgccttaagcac
cgtggtgttatttgtgaaaagtgtggcgttgaagtaacgctgaccaaagtgcgtcgtgac
cgtatgggtcatattgagcttgctagcccagttgcgcatatttggttcttaaaatcatta
ccgtcacgtatcggcttaatgctagacatgacacttcgtgacatcgagcgcgtactttac
ttcgaatcattcgtggtaactgagccgggtatgacaacgcttgagcgtggtcagctttta
ggtgaagaagagtacctagatgcgctagaagagcacggcgatgagtttgaagcgaagatg
ggtgcagaagcagtattagacttgcttcgtgaacttgatcttggccaattaattgctgaa
atgcgtgaagagttaccaacaattaactctgaaacgaagcgtaagaagatcactaaacgt
cttaaattaatggaatcgttccaccaatcaggtaacaaccctgagtggatgatcatgaca
gtacttccagtattgccacctgatctacgtccattagtaccactagacggtggtcgtttt
gcgacatctgatctaaatgacctttaccgtcgtgttattaaccgtaataaccgtcttaag
cgtctattagatttagcggcaccagatattatcgtacgcaacgaaaaacgtatgttacaa
gaagcggttgatgcgctacttgataacggtcgtcgcggtcgtgcgattacaggttctaat
aaacgtcctcttaaatcgcttgctgatatgatcaaaggtaagcaaggtcgtttccgtcag
aacttacttggtaaacgtgtagattactctggtcgttctgtaatcacagtaggtcctacg
cttaaactacaccagtgtggtcttcctaagaagatggcacttgagctgtttaaaccattt
atctacggcaaacttgagcgtcgcggcatggctacgactatcaaagcagcgaagaagatg
gttgagcgtgaagtagcagaagtatgggatgtattagacgaagtaattcgtgaacatcca
gtgttacttaaccgtgcaccaacacttcaccgtttgggtatccaagcgttcgaacctgtg
ctaattgaaggtaaagcgattcatttacacccattagtatgtgcggcgtacaacgctgac
ttcgatggtgaccaaatggcggtacacgtaccgttaacgcttgaagcacagttagaagca
cgtgctctaatgatgtctacaaacaacattctgtctccagcgaatggtgagccaatcatc
gttccttcacaggacgttgtattaggtctttactacatgacgcgtgatcgcattaatgcg
aaaggcgaaggtgcagtatttaaagatcctaaagaagctgaaaaagcataccgcagcggc
aacgctgagctacatgcgcgcgtaaaagtacgtatcagcgagacaattaagaatgaagaa
ggtgaagcagttgattacgttactattgttgaaacaacagtaggtcgtgcgattctttca
cttatcctacctaaaggcatgccgtttgagctaatcaaccaagccctaggtaagaaacag
atttctggcttattaaacgagtgttaccgtcgtctaggtcttaaagatactgttatcttt
gctgaccaagtaatgtacaccggtttccactacgcaatgaagtcaggtgtttcaatcggt
attgatgacttagttatcccaccggttaaagcagaaatcattgaatcagcggaagctgaa
gtaactgaaatcaaccaacaattccaatcaggtcttgtaacggctggtgaaaagtacaat
aaagttatcgatatctggtcacgtgtaaatgaaaacttatcacgtgagatgatggcgaac
ttatcaaaagacacggtaatcaacgcgaaaggtgaagaagaagagcaatcttcattcaac
tcagtgtttatgatggccgactctggtgcacgtggtagcgccgctcagatccgtcagtta
gcgggtatgcgtggtctaatggcacgtccagatggttcaatcatcgagacaccaatcacg
gcgaacttccgtgaaggtctaaacgtactacagtacttcatctcaacgcacggtgcgcgt
aaaggtcttgccgatacagcacttaaaacagcaaactcgggttacttaacgcgtcgtcta
gtagacgttgcacaagacttagtaatcaacgaagacgattgtggcacagaagatggctta
acaatgaaaccgcttattgaaggtggtgacgttgtagaagcacttcgcgaacgtgtactt
ggtcgtgttgttgctgaagatgttgttattcctggtactaacgaagtacttgttgagcgt
aacattatgcttgacgaaaaactgtgtgaccttttagaagagcactcagtggatgaagta
cgcgttcgttcagttatcacctgtgataatgactttggtgtatgtgctaagtgttacggt
cgtgaccttgcgcgtggccacatcatcaatccaggtgagtcagtaggtgttatcgcggca
caatcaatcggtgagccgggtacacagcttacaatgcgtaccttccacatcggtggtgcg
gcatctcgagcgtctgctgagaacagtgtacaagttaaaactaacggtacattgaagtta
cacaatgcgaagtacgtattaaacacagacggtaagattgttatcacgtctcgttcaaca
gagatcactatcatcgatagctttggtcgtgagaaagagcgttataaagtaccttacggt
gccgtgttaacagtacaagataattcggaagttcaaggtaacgatatcgttgcgacttgg
gatccgcatagtcacccaatcgttcttgagcataagtcaaaaatctcgttcagcgatatt
gatgactcaaataccgaagcacaaacagatgagttaactggtttaacacgtgtggttgtt
aaagacttaggtaaagtaaatgcgaaagaacctaaactaatcatcgaaagcgatgagcgt
ggtctgcaagaaacacgtcttccttcattcacaacgattgaagtaacagacggcgcgaca
gcaaacccaggtgacgtacttgcacgtattccgcaagaaggttcgaagactcgtgatatc
acgggtggtctacctcgcgtagctgacttatttgaagcacgtaagccgaaagatcctgca
attcttgcagaaatcaccggtacgattagcttcggtaaagaaacgaaaggtaagaagcgt
cttgtaatcacgccagcagagggtgacgcatacgaagagatgattcctaaatggcgtcaa
cttaacgtgttcgaaggtgagcaagtgtctaaaggtgaggttatcgccgatggtccagaa
tcaccacatgacatcttacgcctacgtggtgtaactcatgttgcaaactatatcgttaac
gaagtgcaagaggtttaccgcttgcagggcgttaagatcaatgacaagcacattgagaca
attattcgtcagatgctacgtaaatgtatcattcttgacggcggtgacactgagttctta
gccggtgaacaagttgaagtggcacgcgttaatatcgcgaaccgcgaccttgaaaagcaa
ggcaagatcccagctaaatttgaaatccagttaatgggtatcactaaagcgtcacttgca
acagaatctttcatttcagcagcctcgttccaggagacaacacgtgtccttactgaagcc
gctgtaaatggtaagagcgatgagcttcgtggtctgaaagagaacgtaatcgtgggtcgt
ctgatcccagccggtactggctttgcgtatcaccaagaccgtttgaaccgtcgtaagcaa
ggtgaaatcatcgaagagcagactgttagcgctgaagaggcaactcaagcattaactgac
gcacttaatgctgatatctctggaaaccaataa
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