Pseudoalteromonas sp. JSTW: GZH31_03685
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Entry
GZH31_03685 CDS
T10506
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
psjs Pseudoalteromonas sp. JSTW
Pathway
psjs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psjs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GZH31_03685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psjs03019
]
GZH31_03685
Enzymes [BR:
psjs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GZH31_03685
Messenger RNA biogenesis [BR:
psjs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GZH31_03685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QLJ08973
LinkDB
All DBs
Position
787191..788426
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AA seq
411 aa
AA seq
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MSVTSFSELNLAPELLSALQAENYHTPTAIQSQTIPLILAGVDVMGSAQTGTGKTAAFVL
PLLDNLLREEPLPEAVKVLILTPTRELAQQVFASVERYAANTPIKAALAYGGASIGPQIK
AIKGAQVVVATPGRLLDHVIKGSIKLSAISALVFDEADRMLDMGFIDEIKRILRHVPKQR
QTLLFSATFDDSIFELSKQLLNDPKLVEVDKRNSAAVEVEQIVYAVDEDRKRELVSHMIG
MKNWQQVLIFTRTKQTADSLAKEMCKDGLKTESIHGDKSQGARDKALQNFKTGVTRVLVA
TDVAARGLDIASLKYVINYELPYVAEDYVHRIGRTGRAGETGLAMSLVSIDEQWLLDEID
VLLDTRLTPQWLPGYEPDLTKEPKQVRKNTNKARRSRDKKRILGQKNPRRR
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtaaccagcttttcagagttaaaccttgcgcctgaactcctttcagcattgcaa
gcagagaattatcacaccccaacggctattcaaagccaaactatcccgcttattttagcc
ggggttgatgttatgggaagtgcacaaacaggcacgggtaaaacagctgcctttgtatta
ccactgcttgataacttattgcgtgaagagccgctgcccgaggctgtaaaagttttaatc
ctgacaccaacgcgagagcttgcacagcaagtatttgccagtgttgagcgttatgcagct
aatacacctattaaagccgcgcttgcttatggcggcgccagtattggcccacaaattaaa
gccattaaaggtgcgcaagttgtggtggctacaccaggacgattacttgatcatgtgatt
aaagggagcattaaattatctgccattagtgcccttgtttttgatgaagcagatcgcatg
cttgatatggggttcattgatgaaataaagcgtattcttcgtcatgttccaaaacagcgc
caaaccttactcttttcagccacatttgatgacagcatttttgagctaagtaaacagttg
ttgaatgatcctaagttagttgaggttgataaacgcaattcggctgctgttgaagttgag
cagattgtgtatgcggttgatgaggatcgtaaacgcgaactcgtttcacatatgatcggc
atgaaaaattggcaacaagtacttatattcacccgcactaaacaaacggccgatagtctg
gcaaaagaaatgtgtaaggatggcttaaaaacagagtctattcacggcgataaaagccaa
ggggcgcgagacaaagcgctgcaaaattttaaaacgggtgtcactcgagtacttgtcgct
acagatgttgcggcgcgtggccttgatatcgcctcattaaagtatgtgattaactacgaa
ctaccttatgttgcagaggactatgttcaccgtatagggcggacaggacgagcaggtgaa
actgggttggccatgtcattggtgagtattgatgagcaatggttactggatgaaattgat
gttttattagatacacgcttaacaccacaatggctgccagggtacgagcctgatttaaca
aaagagccaaaacaagtccgaaaaaacacgaataaggcacgacgctctcgtgacaaaaaa
cgtatattagggcaaaaaaatcctaggcgccgatag
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