Pseudoalteromonas sp. JSTW: GZH31_03815
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Entry
GZH31_03815 CDS
T10506
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
psjs Pseudoalteromonas sp. JSTW
Brite
KEGG Orthology (KO) [BR:
psjs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
psjs03009
]
GZH31_03815 (srmB)
Enzymes [BR:
psjs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GZH31_03815 (srmB)
Ribosome biogenesis [BR:
psjs03009
]
Prokaryotic type
rRNA helicases
GZH31_03815 (srmB)
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SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
AAA_22
AAA_30
AAA_11
SNF2-rel_dom
PhoH
WSD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QLJ08997
LinkDB
All DBs
Position
complement(817787..819013)
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AA seq
408 aa
AA seq
DB search
MQFSEFDIDNKLLNAINKMGFDTPTSIQQQAIPEALQGRDILASAPTGTGKTAAFLIPAI
QYLLDFPRRDPGFARVLIMTPTRELAYQIHEHCEQLAEQTHLKIGVVTGGINYGTHKEIF
ENNNDILIATPGRLMEYLETENFHAENVEMLILDEADRMLDMGFRKEMLRICDEARNRRQ
CFLFSATLEGDSVELFAERILNDPALLEAESSRKEKAKIHQWVHLADDYNHKLKMLVDIL
NGDDIHKAIVFVKTRERLESLIGALNNEGLRVAWLRGEMPQDKRMKAMENFHSGRNKILV
ATDVAARGIDVADISHVINFDMPRTADIYVHRIGRTGRAGKKGIAISFIEAHDVAILGKV
ERYIEQKLKRRVIKGIEPQHKEAKIPSKKKKDPAKIKAKKKAKPKKKK
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgcaattttctgaatttgatatcgataacaaactgttaaatgccattaataaaatgggt
tttgatacgccaaccagcattcaacaacaagcgatccctgaagcattacaagggcgcgat
attttggcatctgcacccacaggtaccggtaaaacagccgcgtttttgatcccagctatt
caatacttgcttgatttccctcgtcgtgaccctggttttgcccgcgtacttatcatgact
cctactcgcgagcttgcttatcaaatccatgagcattgtgaacagcttgctgagcaaaca
caccttaaaataggtgttgtgacgggcggcattaactatggaacgcacaaagaaattttt
gagaacaataacgacattcttatcgcgacacctgggcgcttaatggaatacctcgaaacc
gagaacttccatgctgaaaatgtcgaaatgcttattttagacgaagccgaccgcatgctc
gatatgggctttcgtaaagaaatgctgcgtatttgtgatgaagccagaaatcgtcgtcaa
tgttttctattttcagccacacttgaaggtgacagtgttgagcttttcgctgagcgtatt
ttaaatgatcctgcgctactagaagcagaatcgtcgcgtaaagaaaaagcaaagatccac
cagtgggttcacttagccgacgactacaaccataagcttaaaatgttagtcgatatctta
aacggcgatgatatccataaagcgatagtgttcgttaagacccgtgaacgcctagaatca
ttaattggtgcgttaaataacgaaggactgcgcgttgcttggttacgtggtgaaatgcca
caagataaacgcatgaaagcaatggagaacttccattctggccgcaataaaatattggta
gcaaccgatgtggctgcccgtggtattgacgtggcagatatcagccatgtgattaacttt
gatatgcctcgcaccgcagacatatacgttcaccgtattggacgtactggtcgtgcaggc
aaaaaaggaatcgcgatttcatttatcgaagcgcatgacgttgccattttaggcaaagtt
gagcgttacatcgaacaaaaactaaagcgtcgagtaatcaaagggatagagccgcaacac
aaagaagcaaaaatcccttctaaaaagaaaaaagatccagcaaagatcaaagcgaagaaa
aaggcaaaaccaaaaaagaaaaagtag
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