Pseudoalteromonas sp. JSTW: GZH31_05475
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Entry
GZH31_05475 CDS
T10506
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
psjs Pseudoalteromonas sp. JSTW
Pathway
psjs03030
DNA replication
psjs03430
Mismatch repair
psjs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psjs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GZH31_05475 (dnaE)
03430 Mismatch repair
GZH31_05475 (dnaE)
03440 Homologous recombination
GZH31_05475 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psjs03032
]
GZH31_05475 (dnaE)
03400 DNA repair and recombination proteins [BR:
psjs03400
]
GZH31_05475 (dnaE)
Enzymes [BR:
psjs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GZH31_05475 (dnaE)
DNA replication proteins [BR:
psjs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
GZH31_05475 (dnaE)
DNA repair and recombination proteins [BR:
psjs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
GZH31_05475 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
HHH_3
Motif
Other DBs
NCBI-ProteinID:
QLJ09299
LinkDB
All DBs
Position
1181592..1185083
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AA seq
1163 aa
AA seq
DB search
MPAPQFVHLRVHSDFSMVDGLAKTKPIVAKAEELQMPALAITDQMNLCGLVRFYGAAHGA
GIKPIVGADFWLRSPEFEDEPCRITILAKDNEGYKNLTLLISKAYQRGHVFHRPVIDREW
LVGLKNGLIILSGAKDGDLGKALLKGNAGLIESVVSFYKQHFSDHYYIELIRTERPFEED
YLHLAVELASQEQLPVVATNEVVFLKPENFEAHEIRVAIHDGYTLEDKRRPKRFSDQQYL
KTAEQMAELFSDIPEALENTVEIAKRCNVTVQLGTYFLPDYPTGSLKIDEFLVKVSKDGL
EERLQFLFPDEEERKEKRVEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNNIPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVSA
LYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPGDPGMTLAKAFDVEPR
LQEAYDGDEEVKELIDMCRILEGCTRNAGKHAGGVVISPTTITDFAALYCDDEGKFPVTQ
FDKNDVETAGLVKFDFLGLRTLTILQWALDMTNERLAREGKDPVDINAIPLDDKPSIDLL
LRAETTAVFQLESRGMKDLIRRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE
ISYPDVQWQHESLQPILEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEM
AKQRSTFEEGAEKNGIDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWMKTHYPA
EFMAAVMSADMDNTDKIVTLVDECENMKLTLLPPDVNAGEYKFTVNLKGQIVYGIGAIKG
VGEAPVEAILEARKEGGPFKDLFDFCARVDLKRLNKRVVEKLIYAGALDQLGPDKTQPGR
ATLLASLKDAMRAADQHHKAESLGQADLFGLLATEPDEVEQAFIKAPDLTDNEWLDGEKE
TLGLYLTGHPINQYRKELKYYTSGRLVDLQPTNRDVQSTAAGLVIAARTLINKKGNRWGL
VTLDDKSARIDVRLFPEQFEMYQDMLQVNNILVISGQVSFDNFSGGITMTARDICTIAQA
REKRIKAIKMTLNMVQIEANFFDNLQKVLEPYKFGTCPIKVFYQRPDALAEITLGTEWCV
TPSDDLIHKLSLMAAQDVELEFN
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgcctgcgccgcaatttgttcatttacgtgttcattctgatttttcaatggtggatggc
ctcgcaaaaacaaaaccaatcgttgccaaagcagaagagctacaaatgccagcgctggcc
ataacagaccagatgaacttatgtggtttggtgcgtttttatggggctgcacatggcgct
ggaattaagccaattgtaggagctgatttttggttacgaagccccgaattcgaagatgaa
ccatgccgaataactattttagccaaagataacgaaggctataaaaacctcacgttatta
atctctaaagcgtatcaacgcgggcatgtttttcatcgtcccgtgattgaccgtgaatgg
ctggtggggctcaaaaatggcctcataattttatcaggcgcaaaagatggcgatttaggc
aaagcattacttaaaggcaatgctggcctgattgagtcggtggtgagtttttataagcaa
cactttagtgaccattattatattgagcttattcggactgagcgcccatttgaagaagat
taccttcatttagcggtagaattagcaagccaagaacaactgcccgtggtggccactaac
gaggtggtgtttttaaaacctgaaaacttcgaagcccacgaaattcgtgttgcaattcat
gatggttacacccttgaagataagcgccgaccaaaacgtttttctgatcagcaataccta
aaaacagctgagcaaatggctgagctctttagtgatattcctgaagcgctcgaaaacacc
gttgaaattgcaaaacgctgtaacgtaaccgtgcagttgggcacctatttcttacccgat
tacccaacgggctcgctcaaaatcgatgaattcttagttaaagtatcgaaagatggtctt
gaagagcgattgcagtttttattccccgatgaagaagagcgaaaagaaaagcgcgtagaa
tacgatgagcgcttacaaatagagctcgatgtaattaaccaaatggggttcccgggttac
ttcttaatcgtaatggagttcatccagtggagtaaggataacaatattccagtgggacca
ggacgtggctcgggtgcgggctcgttggttgcatatgcacttaaaattaccgacttagac
ccgcttgaatttgacttactattcgaacgtttcttgaaccctgaacgtgtatccatgccc
gactttgacgttgacttctgcatggacagacgtgatgaagtgattgatcacgtttcggca
ttgtatggccgcgacgcggtatcgcaaattatcacctttggtaccatggctgcaaaagcg
gttattcgtgatgtggggcgtgtacttggccacccttatgggtttgtcgatcgcatatca
aaactagtccctggcgaccccggtatgacgcttgcgaaagcgtttgatgtagaaccgcgt
ttacaagaagcctatgacggtgacgaagaagtaaaagagcttatcgacatgtgtcgcatt
cttgaagggtgtacacgtaatgccggtaaacacgcggggggggtggtaatttcacccacc
acgatcaccgattttgctgcactttattgcgacgatgaaggcaagttcccggtaactcaa
tttgacaagaatgacgttgaaaccgcaggcttggttaagttcgacttcttaggtttaaga
acattaaccatcttgcaatgggcgctcgacatgaccaacgagcgtttagcgcgcgaaggt
aaagaccccgttgatatcaatgcaatcccgcttgatgataaacccagcattgacttattg
ctccgcgctgagacgaccgcggttttccagctagaatcgcgcggcatgaaagaccttatt
cgtcgtctaaaacctgactgctttgaggatatgattgcactcgtggcattattccgaccg
ggtccactgcaatcaggcatggtagataactttatcgaccgtaagcatgggcgtgaagaa
atatcgtaccccgatgtacaatggcaacatgaaagcttacagccaatattagagccgacc
tacggcatcatcctgtatcaagagcaggtaatgcagattgcgcaggtactggcaggttat
acccttggtggcgcagacatgcttcgccgtgcaatgggtaagaaaaaacctgaagaaatg
gccaagcagcgttcaaccttcgaagaaggtgcagaaaagaacggtattgacggcgaacta
gcgataaaaatcttcgacttggtcgaaaagttcgcaggttacggctttaacaaatctcac
tccgctgcttatgcattggtgtcgtatcaaactctgtggatgaaaacgcattatccggcc
gagtttatggcggccgtaatgtcggctgatatggataacaccgataaaattgttaccttg
gtcgacgaatgtgaaaacatgaagttaaccttgctaccgcctgatgtaaatgcgggtgag
tacaagtttacggttaacttaaaaggccaaattgtttacggtattggtgcgattaaaggg
gtgggtgaagccccagtagaagccattttagaagcgcgtaaagaaggcggcccgtttaaa
gacttatttgatttttgcgctcgcgttgatttaaaacgtttaaataaacgcgtagtagaa
aaacttatttatgcgggggcgctggatcagttaggccctgataaaacccagcctggtcgt
gcaacattgttagctagtttaaaagatgccatgcgagcggcagaccagcaccataaagcg
gagtcgcttggtcaggctgatttatttggtttattagccacagagccagacgaagttgaa
caagcctttattaaagccccagaccttacggataacgaatggttagacggtgaaaaagaa
acgttagggctgtatttaacgggccacccgattaatcagtaccgaaaagagcttaaatat
tatacttcggggcgtttggttgatttgcagccaacgaatcgcgatgtgcagtcaaccgct
gcaggcttagtcattgcggcgcgtacgctcataaataaaaagggaaatcgttggggtctt
gtaactttagatgacaagagtgcccgtattgatgtacgcttattcccagaacagtttgaa
atgtaccaagatatgctgcaagttaacaatatcttggtaatatctggacaggtcagcttt
gataacttctccggtggcattacaatgaccgccagagacatatgcaccattgctcaagcg
cgagaaaagcgtataaaagcgattaaaatgacgctgaatatggtgcagatcgaggcgaac
ttcttcgataatttacaaaaagtgcttgaaccttataagtttggcacgtgtcctattaaa
gtattctatcaacgtcctgatgcgttggctgagattacgttaggaaccgaatggtgtgtt
acgcctagtgatgacttaattcacaagttatcactgatggcggcgcaagatgtagaacta
gaatttaattaa
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