Pseudoalteromonas sp. JSTW: GZH31_09610
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Entry
GZH31_09610 CDS
T10506
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
psjs Pseudoalteromonas sp. JSTW
Pathway
psjs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psjs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
GZH31_09610 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psjs03400
]
GZH31_09610 (sbcB)
Enzymes [BR:
psjs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
GZH31_09610 (sbcB)
DNA repair and recombination proteins [BR:
psjs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
GZH31_09610 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
GZH31_09610 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GZH31_09610 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
QLJ07075
LinkDB
All DBs
Position
2097604..2099049
Genome browser
AA seq
481 aa
AA seq
DB search
MAYQEQQQPTIYWHDYETFGASPQKDRPSQFAGIRTDLDLNIIGEPLIEYCKPAADYLPH
PEACLITGITPQIAMQKGLPEAEFMAKIHAEFSQPNTCVAGYNSIRFDDEVTRYSLYRNF
YDPYEREYKNNNSRWDIIDLVRACYALRPEGIEWPLKDDGTPSFKLEHLTVANGIEHAAA
HDALSDVTATIALAKLIKEKQPKLYQFFFGLRSKKALADLVDVFNMTPLVHTSSRIPASQ
GCTSWIAPMSFHPVNKNAIICFNLTDDPQVLLDLSVEELRTRLYTKHTDLGENEAPVGLK
LVHLNKCPILAPAKTLLPENAARLGIDREKCLQNLAILKANTELRDKVTEVFNEQRDYGE
THNPDYQLYDGFTSHADKAKFAIIRDASPEQLATMQLDFEDKKFNTLLFRYRARNWPHTL
SQDELAQWRMYCQNKLMHGDDSPSISAHDFMITLENLAHEHDDNEKNLHILKALYNYAQS
M
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atggcatatcaagaacaacagcaaccaacaatttactggcatgactacgagacctttggc
gccagcccgcaaaaagaccgcccgagtcaatttgctggcatacgtaccgatcttgattta
aatattattggtgagccgctcattgaatattgtaaacccgcggcagactatttaccgcac
ccagaggcgtgtttaataaccggcattacaccacaaatagccatgcaaaaaggactgcct
gaagccgaatttatggcaaaaattcatgccgagtttagtcagcctaacacctgtgtagct
ggctataacagtattcgctttgacgatgaagtaacacgttacagtctatatcgtaatttt
tatgacccttatgagcgagagtataaaaacaataatagccgttgggatattattgacctt
gttcgtgcttgttatgcgttgcgaccagaaggtattgagtggccattaaaagatgatggc
acacccagctttaaacttgagcatttaactgttgctaacggcatagaacatgccgcagct
cacgacgcgttaagtgatgttactgcaaccattgcgcttgcaaagcttataaaagaaaaa
caacccaagctgtatcaattcttttttggtttacgctctaaaaaagcgctggctgattta
gttgatgtgttcaacatgacaccgctggtacatacttcatcacgcataccggcaagccaa
ggctgtactagctggatagcgccgatgagttttcatccagtaaacaaaaacgccatcatc
tgctttaatttaacagatgatccgcaggtgttattagatttatcggttgaagagttacgg
acacgcctttacaccaaacacaccgaccttggcgaaaacgaggcccctgtcggcttaaaa
ctagttcacttaaataagtgccctattcttgcgcccgctaaaacactattaccagaaaat
gccgcacgcctagggatagaccgcgaaaagtgtttgcaaaaccttgctatattaaaagcc
aatactgaacttcgcgacaaagtaaccgaagtatttaacgaacaacgtgactacggtgaa
acacataaccctgactatcaactatatgatggctttacgagccatgccgataaagccaaa
tttgccattattcgcgatgcaagccctgagcaactggccacaatgcagttagattttgaa
gacaaaaagtttaacaccttgttgtttagataccgtgctcgcaactggccacacacctta
agccaagacgaacttgcacagtggcgtatgtattgccaaaataaattaatgcacggcgat
gacagtccttctattagcgcacacgattttatgattacgctcgaaaatttagctcatgag
cacgacgataatgaaaaaaatctgcacattttaaaagcactgtataactacgcacaaagt
atgtaa
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