Pseudoalteromonas sp. JSTW: GZH31_13320
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Entry
GZH31_13320 CDS
T10506
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
psjs Pseudoalteromonas sp. JSTW
Brite
Transcription machinery [BR:
psjs03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
GZH31_13320 (rapA)
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Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
QLJ07745
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Position
2948153..2951047
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AA seq
964 aa
AA seq
DB search
MNFSLGQRWISDTESDLGLGTVVALEGRQVSILFPASGENRVYSLTEAPVTRVAFNPGDV
IRSVEEWELEVESVEEQGELLCYHGTRVDNGEKVQLKETFLDHFIKFNKPQDRLFAGQVD
RFDRYTLRYQTWQHQFERQQSPLKGLIGQRANLIPHQLYIAQEVGKRFAPRVLLSDEVGL
GKTIEAGMILHQQIISGRASRVLIVVPENLQHQWLVEMLRRFNLRFSIFDEERCDEAFAD
SPNVFETEQLVLTSLEFLSKKKRWFEQATLADWDLLVVDEAHHLSITNGKPSTEYQRMAE
LSQDIPGLILLTATPDQLGHRSHFARLQLLDPDRFYDYDAFVEEESNYKDVAEAANQLLS
EQRLDDTARETLKALLKETDITEVLAKAEQGDETARNEILSMLLDRHGTGRILFRNSRSG
IDGYPSRKLHAYPMAMPKQYKTAMSVLGNIGGIQSAELSALRALFPEKIFQEFEGENASW
GAFDPRVDWLIETLKTLKHEKVLLICAKAETAISLEQILREREAIKASVFHEGMSIVERD
RAAAFFADEYDSAQILLCSEIGSEGRNFQFSHHLVLFDLPLNPDLLEQRIGRLDRIGQTQ
DVNIHVPYFENTAQEVLLRWYNEGLDAFETTSTTGQMLYKEFGEELLEFIGTHNCDEEEL
DPLLEQVASQNAKLRKQMESGRDRLLELHSSGQGRAESLVADIEELDDQFTLPSYMINVF
DTFGVSQEDKGENTIILKPTEHMLNPSFPCLKDDGITVTFDRATALSQEDAHFISWDHPM
VQGSLDMICDDDFGTASVALLKNKKLPAGTFFVELIFIAEAMAPKSLQVGRFLPPTPIRV
LLDKSSNNLADNVAFDAFNQQLSAVGRQTASKLASALQSAIHPMITSAQGLAQTKLDALR
VESLEKMHTALGEEQARLTALKQINPNIRDEELSFFDKQRSDLTTYIEKAQVKLDAIRLI
VVSH
NT seq
2895 nt
NT seq
+upstream
nt +downstream
nt
atgaatttttccttaggtcagcgttggatcagtgatactgagtcagatttaggattaggc
accgtagttgcccttgaaggccgtcaggtcagcattttatttccagccagtggtgaaaac
agagtttattctttaacagaagcacctgttactcgtgtcgcatttaatccaggcgatgtt
attcgcagcgttgaagagtgggaacttgaagtagagtcagttgaagaacaaggtgagctt
ttatgctaccacggtacacgtgttgataacggtgaaaaagttcagttaaaagagaccttt
ttagatcactttattaaatttaataaaccgcaagaccgcttatttgcaggccaagtagac
cgttttgatcgttacacccttcgctatcaaacttggcagcaccagttcgagcgtcagcaa
tcacctttaaaaggcttaattggtcaacgtgccaacctaatacctcaccagctttatatt
gcacaagaagtgggtaaacgtttcgcgccgcgtgttttattgtcagatgaagtgggcctt
ggtaaaaccattgaagcggggatgattttacatcaacaaatcattagtggccgagctagc
cgcgtattaattgtggtgcctgaaaacctgcaacaccaatggctcgttgagatgcttcgt
cgctttaatttacgtttctctatttttgatgaggaacgttgtgatgaagcattcgcagac
tcaccgaatgtattcgaaacagaacagttagtacttactagccttgaatttttaagcaag
aaaaaacgctggtttgaacaagcaacattagccgattgggatttactcgtggttgatgaa
gcgcaccatttgagtattacaaatggtaaaccaagcacagaatatcaacgcatggctgaa
cttagccaagatattccaggccttattttactgacagcaacacccgatcaattaggccac
cgcagccactttgcgcgtttgcaattactcgaccctgatcgtttttatgattacgatgct
tttgttgaagaagaaagtaactacaaagatgtcgcagaagctgccaatcaactactcagt
gagcaacgcttagatgacacggctcgcgagacattaaaagccttattaaaagaaaccgat
atcactgaggtgcttgctaaagctgagcaaggtgatgaaaccgcgcgtaatgaaatttta
tcaatgctactggaccgccatggtaccggccgtattttgttcagaaatagccgcagcggt
attgatggttacccaagccgtaaactccacgcttacccaatggcgatgccaaagcaatat
aaaaccgcaatgtcggtcttagggaatataggcggcattcaaagtgctgagctaagtgct
ctgcgcgcgttattcccagaaaaaatatttcaagaatttgaaggtgaaaacgccagttgg
ggcgccttcgacccacgtgttgactggttaattgaaacattaaaaacactaaaacacgaa
aaagtcctgctaatttgtgctaaagctgaaacagcgattagccttgaacaaattttacga
gagcgcgaagccattaaagcatctgtgttccatgaaggtatgtcgattgttgagcgtgac
cgtgctgcggcattttttgctgatgaatacgacagcgcacaaatccttctgtgttcagag
attggttcagaaggccgtaacttccagttctcacatcatttagtgctctttgatttacct
ttgaaccctgatttgttagagcaacgtattggtcgccttgaccgcattggtcaaacgcaa
gatgtaaacattcatgtgccttactttgaaaatacagcacaagaagtcttgctacgctgg
tataacgaaggcctagatgcgtttgaaacaacatcaaccacagggcaaatgttgtataaa
gaattcggtgaagagctgcttgaattcattggtacacataattgtgatgaagaagagcta
gacccactactagaacaagttgctagccaaaatgcaaaactgcgcaaacaaatggaaagt
ggtcgtgaccgtttattagagctgcactcaagtggtcaaggccgtgctgaaagcttagtc
gctgatatcgaagagctagatgaccagtttacattgccaagttacatgatcaatgtgttc
gacacttttggtgtaagccaagaagataaaggtgaaaataccattatcttaaaaccaacc
gagcatatgttgaatccctctttcccttgcttaaaagatgacggtattaccgtgaccttt
gaccgtgcaactgcactatcgcaagaagatgcgcattttatcagctgggatcacccgatg
gtgcaaggcagtttagacatgatttgcgatgatgactttggcacagcatcggttgccctg
ctgaaaaacaaaaaactccctgcgggtacattttttgttgagcttatcttcattgcagaa
gccatggcaccgaagtcattacaggtaggtcgtttcttaccgccgactcctattcgagtt
ttacttgataaaagcagcaataacttagccgataatgttgcctttgatgcctttaaccaa
cagctttctgcggttggtcgtcaaacggcaagtaagttagccagtgcgctacaaagtgcc
attcacccaatgatcaccagcgctcaggggttagcccaaacaaaactcgacgcattgcgt
gttgagtcattagaaaaaatgcataccgcattaggtgaagagcaagcccgtttaaccgcg
cttaaacaaattaatccgaatattcgtgatgaagagcttagcttctttgataaacaacgc
agtgacctgacgacctatattgaaaaagcccaagttaaattagatgcgattcgtttgatt
gttgtgtcgcactag
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