Pseudoalteromonas sp. JSTW: GZH31_19580
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Entry
GZH31_19580 CDS
T10506
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
psjs Pseudoalteromonas sp. JSTW
Pathway
psjs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psjs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GZH31_19580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psjs03019
]
GZH31_19580
03400 DNA repair and recombination proteins [BR:
psjs03400
]
GZH31_19580
Enzymes [BR:
psjs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GZH31_19580
Messenger RNA biogenesis [BR:
psjs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GZH31_19580
DNA repair and recombination proteins [BR:
psjs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GZH31_19580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
ResIII
RecQ_Zn_bind
TniB
AAA_22
SHCBP_N
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
QLJ10225
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All DBs
Position
pjat527:complement(769267..771201)
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AA seq
644 aa
AA seq
DB search
MTTALHTSLNQYFGFTEFRQGQQQTIEQLLNQQSSLAIFPTGSGKSLCYQLTALHLPNLT
LVVSPLLALMKDQISFLNSKGIYAASLDSSQTSEQSHTVMSDVRTGKVKILMVSVERFKN
ERFREFIKQVPISMLVVDEAHCISEWGHNFRPDYLKLPRYRDELNIPLVLLLTATATKKV
KRDMCERFAIAPECVVQTGFYRANLDLSVLSVASQDKQSHLTRVIAEQQGAGIVYVTLQH
TAEQVAAALAQTGLNAVAYHAGLDDDKRWQIQDDFMAGNINIVVATIAFGMGIDKSDIRF
VIHYDLPKSIENYSQEIGRAGRDSKQSNCYTLANLDGLNTVENFVYADTPEQTGIEYVIN
NIRTEQTNGQWEMQEYSLSSDSNIRALALKTLLVQLEIHGAITPLYAYYADFKYKFLTDK
DTLLQQFDEQRQAFLQQVFNHTEFKKIWGTLNFDALTHATQVDRKRVVAALDYLAEKGHI
ALETKRITQVYEVNNEVINVDNLASQLHQYFIEKEQAEIKRIAALVRFFELNSCLSYNLA
RYFDDHNAPKGCGHCSVCRGQSVKLSYSLEHTMPDTAVIAAKVTQLKEHLATKGVTEISI
DTQCRFLAGMSVPLFTRNKVRQLSGFGVCEHLRYSDIKAVLQQL
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgactacagcactccacacttcgctaaatcaatactttggctttactgaatttcgccag
ggtcagcaacaaacgattgaacaactgttaaatcaacaatcatcattggctatctttccg
acggggtcgggcaagtcgttgtgttatcaattaactgcattgcatttgcctaatttgacc
ttggtggtttcacccttgttagcgctgatgaaagatcaaatcagctttttgaatagcaaa
ggtatttacgcggccagcttagattcgagtcaaacgagcgaacaaagtcataccgtgatg
agtgatgtgcgaaccggaaaggtaaaaattttaatggtgtcggtggagcgttttaagaac
gaacgctttcgcgagttcatcaagcaagtgccgatttcaatgctggtggttgatgaggcg
cactgtatttctgaatgggggcataactttagacccgactatttaaaactgccacgttat
cgcgatgagcttaatattcctctggtgttgctattaaccgcaacggcaaccaaaaaagta
aaacgtgacatgtgtgagcggtttgccattgcacctgaatgcgttgttcaaacagggttt
tatcgtgcgaaccttgatttatcggtgttaagtgtggcgagccaagacaaacaatcgcac
ttaacacgcgttattgctgagcagcagggcgcaggcatcgtgtatgtgacactgcaacac
actgccgagcaagtggccgcagcgttagcgcagacaggacttaatgcggtggcgtatcat
gcgggtcttgacgatgataagcgctggcaaattcaagacgactttatggcgggtaacatt
aatattgtggttgccaccattgcgtttggtatgggcattgataagtcggatattcgcttt
gttattcattatgatttacctaaatcaattgaaaactacagccaagaaataggccgcgca
gggcgagattctaagcaatcaaattgttataccttggcaaatctagatggcctgaacacg
gttgaaaactttgtctatgccgacacccccgagcaaactggtattgaatatgtgatcaac
aatattcgcacggagcaaacgaatggtcagtgggaaatgcaagaatacagcttgtcgagt
gacagtaatattcgtgcattagccttaaaaacgttattagtacagcttgaaattcatggc
gctatcacgccgttgtatgcctattatgctgactttaaatataagtttttaacagacaaa
gacacacttcttcagcaatttgatgagcagcgccaagcatttttacagcaggtatttaat
catactgagtttaagaaaatttggggcacactcaactttgacgccttaacacatgccacg
caagtcgatagaaaacgggtggttgctgcgctcgattatttggccgaaaaaggtcacata
gcccttgaaactaaacgcattacacaagtgtatgaggtgaataacgaagtcattaatgta
gacaatttagcgtcgcaattacatcagtactttattgaaaaagagcaggcagaaataaaa
cgcattgccgcattggtgcgcttttttgagcttaatagctgtttgagttataaccttgca
cgttattttgatgatcacaatgccccaaaagggtgtggccattgttctgtgtgtcgaggc
cagtctgtaaaacttagttattcacttgagcacaccatgccagacactgcggttattgca
gctaaagttacacagctaaaagagcacttagccactaaaggggtaactgaaatcagtatt
gatactcaatgccgttttttagcgggaatgagtgtgccactgtttacccgcaataaagtt
aggcagctttcaggttttggggtgtgtgaacacctgcgttatagcgatattaaagcggtg
ctacagcagttgtag
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