Pseudomonas sp. JY-Q: AA098_05395
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Entry
AA098_05395 CDS
T09824
Symbol
sbcB
Name
(GenBank) exonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
psjy
Pseudomonas sp. JY-Q
Pathway
psjy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psjy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
AA098_05395 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psjy03400
]
AA098_05395 (sbcB)
Enzymes [BR:
psjy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
AA098_05395 (sbcB)
DNA repair and recombination proteins [BR:
psjy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
AA098_05395 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AA098_05395 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AA098_05395 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
ANI32950
LinkDB
All DBs
Position
1215101..1216534
Genome browser
AA seq
477 aa
AA seq
DB search
MTSSIFWHDYETTGINPRCDRPLQVAGVRTDFDLNEIDEPISLYCRPSDDILPHPAACLV
TGITPQLLAEQGLCEAEFMTRVHAQLAQPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYAR
EWQGGNSRWDLIDIVRTAYALRPEGIEWPQQDGRTSLRLELLSKANGIDHGHAHEALSDV
RATIALARLIRQKQPKLYDWLFQLRSKHKVMEQIRLLQPLVHISGRFSAARNYLGVVLPL
AWHPRNRNALIVCDLHQETLPLLRESAEVLRQRLYTRHDELAEGELPVPLKLVQINRCPV
VAPLSVLRPVDQQRLGLDLTLLQSRGEQLANQQAQWQEKLEHIYGKDEFAPSEDPEQQLY
EGFIGDRDRRLCEQVRALEPAQLSHGHWMFDDPRLPELLFRYRARNFPETLTPEERQRWY
GFCQQRLSDPQWGAPNTLGDFEQARQQAWEGADEAGRRVLEAWQLHARQLQEHYSIG
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
gtgacctccagcattttctggcacgactatgaaaccaccggcatcaacccgcgctgcgat
cggccgctgcaggtggccggcgtgcgcactgacttcgacctcaacgaaatcgacgagcca
atcagcctttattgccgaccgtcggacgacatcctgccgcacccggcggcctgcctggtg
acaggcatcacgccacaactgttggcggagcagggcctgtgcgaagccgagttcatgact
cgcgtgcacgcccagctggcgcaaccgggtacctgtggtgccggctacaacaccctgcgc
tttgacgatgaagtgacccgctacagcctttaccgcaactttttcgacccctatgcccgt
gaatggcagggaggcaatagccgctgggacctgatcgacattgtgcgcaccgcctatgcc
ctgcgcccggaaggcattgaatggccgcagcaggacgggcgcaccagcctgcgtctggag
ctgctgagcaaggccaatggcattgaccacggtcatgcccacgaagcgctttccgacgtg
cgggcaaccattgccttggctcgcctgattcggcagaaacaacccaagttgtatgactgg
ctgtttcaactgcgcagcaagcataaagtgatggagcagatccgtctgttgcagccactg
gtgcatatatccgggcgtttttcggcggcgcgcaattacctgggggtcgtattgccactg
gcctggcacccgcgtaatcgcaatgcactgattgtctgcgacctgcatcaggaaacccta
ccgttactgcgggaaagtgctgaagttttgcgtcagcgcttgtacacccggcatgatgaa
ttggccgaaggtgaattaccggtaccgctcaaattggtgcagatcaatcgttgcccggta
gtggcgccgctgtcggtattgcgcccggtcgatcaacaacgattgggcctggacttgacg
ttgttacaatcgcgcggcgaacaattggccaatcaacaggcgcaatggcaagaaaagctg
gagcacatctatggcaaggacgagttcgccccgagcgaggacccggaacagcagttgtat
gagggttttataggtgaccgcgaccggcgcttatgcgagcaagttcgtgcgctggaaccg
gcgcagttgagccatggccactggatgttcgatgatccgcgtttgccggagctgttgttc
cgctaccgggcacgtaacttccctgaaaccttgacccccgaagagcggcaacgttggtat
ggcttctgccagcaacgcctgagcgacccgcagtggggcgcgccgaataccttgggcgac
ttcgaacaggcacgccagcaagcctgggagggcgccgacgaggcgggcaggcgagtgttg
gaggcctggcaattgcatgctcgacaattgcaggagcactattcaatcggctga
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