Pseudomonas sp. JY-Q: AA098_06350
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Entry
AA098_06350 CDS
T09824
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
psjy
Pseudomonas sp. JY-Q
Pathway
psjy03030
DNA replication
psjy03430
Mismatch repair
psjy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psjy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AA098_06350
03430 Mismatch repair
AA098_06350
03440 Homologous recombination
AA098_06350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psjy03032
]
AA098_06350
03400 DNA repair and recombination proteins [BR:
psjy03400
]
AA098_06350
Enzymes [BR:
psjy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AA098_06350
DNA replication proteins [BR:
psjy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AA098_06350
DNA repair and recombination proteins [BR:
psjy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AA098_06350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
HHH_3
HROB
Motif
Other DBs
NCBI-ProteinID:
ANI33133
LinkDB
All DBs
Position
1428589..1432113
Genome browser
AA seq
1174 aa
AA seq
DB search
MSVPFVHLRVHSEFSLVDGLVRIKPLAKALTGMNMPAVAITDQSNMCSLVKFYKTAMGAG
IKPICGADLWLAGADPEAPLSRICFLAMDPKGYRNLTELISRGWTDGQRNGLVILRREWI
APASEGLIALSAGKEGDIGMALLAGRQDEAEVLLQDWMGMFPERFYVEVQRTNRARDEEY
VHAAVALADKLGAPLVATNDVRFIKQTDFDAHETRVCIGEGWTLDDPRRPRCYSDQQYLK
SAEEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGIDDYLRHVSHEGL
EERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDFIKWAKNNDVPV
GPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFCMDGRDRVIDYV
AEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQE
EILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLTDFSPIACDEEGGGLV
TQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKNLPDLNIDFIPLDDRKTYE
LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR
AELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE
EMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHY
PAPFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKFTVNNDGRIVYGLGAI
KGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALVRSGALDRLGPHFHDE
IKAYHANIDINRATLLSALGEAIKAAEQAAHTADSGHVDLFGSMFDAADVDVYANHRKVR
ELTLKERLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIVDLKPSRETQTIAGMIIALRV
MKNKKGDKMGFVTLDDRSGRIEASLFADAFMAAQSLLQTDAMVVVEGEVSNDDFSGGLRL
RVKQVMTMEDARTKLAESLRLKVAHDALKGDRLKWLGELITRHRGACPITLEYTGSDAKA
MLQFGEQWAIDPADGLIQALRDQFGRENVFLQYR
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtcggttcccttcgttcacctgcgcgtccattccgaattctcgctggtcgacggcctg
gtgcggatcaaaccgctggccaaggcgctgaccgggatgaacatgccagcggtcgcgatc
accgatcagagcaacatgtgctcgctggtgaagttctacaagacggccatgggcgccggc
atcaaaccgatctgcggtgccgacctgtggctggccggtgccgacccggaagccccgctg
tcgcgcatctgcttcctggccatggaccccaagggctatcgcaacctcaccgaactgatc
tcgcgcggctggaccgatggccagcgcaacggcctggtcatcctccggcgtgaatggatc
gccccggccagcgagggcctgattgccctgtcggcgggcaaggaaggcgacattggcatg
gcgctgctggcgggtcggcaagacgaagccgaagtgcttcttcaagactggatgggcatg
ttccccgagcgcttctacgttgaagtgcagcgcaccaatcgcgcacgcgacgaagaatac
gtgcacgcggcggtggcattggccgacaagcttggcgccccgctggtggctaccaacgac
gtacgtttcatcaagcagacggactttgacgcccacgaaacccgcgtctgtatcggtgag
ggctggaccctcgatgacccccgccgtccgcgttgctacagcgaccagcagtacctgaag
tcggccgaggaaatggccgagctcttcagcgacctgcccgacgccatcgccaacaccgtc
gaaattgccaagcgctgcaacatccaggtacagctgggcaagtacttcctgcctgacttc
cccacgcccaacggcatgggcatcgacgactacctgcggcatgtgtcccacgaaggcctg
gaagagcgcctggccgtgctgtggccgaaagagaccacgcccaattatgaagaaaagcgt
caggtttacctggaccgcctgaagttcgagctggacatcatcatccagatgggcttcccc
ggttacttcctgattgttatggacttcatcaagtgggccaagaacaacgacgtaccggtt
ggcccgggccgcggttcgggtgctggctcgctggtggcctatgtactgaagatcaccgat
ctcgacccgctggcctacgacctgctgttcgagcgcttcctcaaccctgaacgtatttcc
atgcccgacttcgacgtcgacttctgcatggacggccgtgaccgggtgatcgactacgtg
gccgaggcctacggccgtaatgcggtgagccagatcatcaccttcggtaccatggccgcc
aaggcggtggtgcgtgacgtggcgcgggtgcaaggcaaatcctatggcctggccgaccgc
ctgtcgaagatgatccccttcgaagtgggcatgaccctggagaaggcctacgagcaggaa
gaaatcctgcgtgacttcctcaagggcgacgaagacgcccgtgaaatctgggacatggcc
ctgaagctggagggtgtgacccggggtaccggcaagcacgccggtggtgtggttatcgca
ccgaccaagctcaccgacttttcgccgatcgcctgtgatgaagagggtggtggcctggta
acccagttcgacaaggatgacgtcgaggccgccggcctggtgaagttcgacttcctcggc
ctgcgtaccttgaccatcatcaagtgggcgatggagatcatcaaccgcgagcaggccaag
aagaacctgcccgacctcaacatcgacttcatcccgctggacgaccgcaagacctacgag
ctgctgcagaaggccgaaaccacggcggtgttccagcttgaatcgcgcggcatgaaggag
ctgatcaagaagctcaagcccgactgcctggaagacctgatcgcactggttgcgttgttc
cgcccgggcccgctgcaatcgggcatggtggacgacttcatcaaccgcaagcacggccgc
gccgagctggcctacccgcactccgactaccagtacgaaggcctcaagccggtactggcg
ccaacctacggcatcatcctgtaccaggaacaggtgatgcagatcgcccaggtgatggca
ggttataccctgggtggcgccgacatgctgcgccgggccatgggtaagaaaaagcccgag
gaaatggccaagcagcgcggtggtttcatcgaaggttgcgtagccaacaatatcgatgcg
gacctcgccggtaacatcttcgacctggtagagaagttcgcgggctacggcttcaacaaa
tcccactccgccgcctatggcctggtgtcgtaccagaccgcctggctgaaaacccactac
ccggcgccattcatggccgcggtcctgtcggcggatatgcacaacaccgacaaggtggtg
gtgctggtggaggaggtgcgcagcatgaagctgcgcctcgacgcgccggacgtgaacttc
tcggacttcaagttcaccgtcaacaacgacggccgtatcgtctacggccttggtgccatc
aagggtgtcggcgaaggcccggtggaggcgattgtcgaggcccgtgcccaaggcggtccc
ttcaaggacctgttcgatttctgtgaacgcatcgacctcaaacgggtcaacaaacgtacc
cttgatgcgctggtgcgcagtggcgcgctggaccgccttggcccgcacttccatgacgag
atcaaggcctaccacgccaacatcgacatcaaccgggcaaccttgctgtcggcgctgggc
gaggccatcaaggcggccgagcaggccgcacacaccgctgacagtggccatgtcgacctg
ttcggcagcatgttcgacgcggcagatgtcgatgtgtatgccaaccaccgcaaggtgcgc
gagctcaccctcaaggagcgtctgaagggggagaaggacacccttggcctgtacctcacc
ggccacccgatcgatgagtacgagaccgagatccgtcgcttcgcccgccagcgcatcgtc
gacctcaagccgtcgcgcgaaacccagaccatcgcgggcatgatcattgcgctgcgggtg
atgaagaacaagaagggcgacaagatgggcttcgtcaccctggatgaccgttccgggcgg
atcgaggcatcgctgtttgccgatgccttcatggcggcacagtccttgctgcagaccgat
gccatggtggtggtggaaggcgaggtcagcaatgacgacttctccgggggcttgcgcctg
cgggtgaagcaggtgatgaccatggaagatgcacgcaccaagctggccgagagcctgcgc
ctgaaggtggcgcatgacgcactgaagggcgaccggctgaagtggctgggcgagctgatc
acccgccatcgcggtgcctgcccgatcacgctggagtacaccggcagcgacgccaaggcc
atgctgcagtttggcgagcagtgggcgatcgatccggccgatgggctgattcaggcgctg
cgtgaccagttcgggcgtgagaacgtcttcctgcaatatcgttga
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