Pseudomonas sp. JY-Q: AA098_07985
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Entry
AA098_07985 CDS
T09824
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psjy
Pseudomonas sp. JY-Q
Pathway
psjy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psjy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AA098_07985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psjy03019
]
AA098_07985
03009 Ribosome biogenesis [BR:
psjy03009
]
AA098_07985
Enzymes [BR:
psjy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AA098_07985
Messenger RNA biogenesis [BR:
psjy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AA098_07985
Ribosome biogenesis [BR:
psjy03009
]
Prokaryotic type
rRNA helicases
AA098_07985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
TrkA_N
Motif
Other DBs
NCBI-ProteinID:
ANI33435
LinkDB
All DBs
Position
1775511..1777190
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AA seq
559 aa
AA seq
DB search
MTQETGGFAALDLNPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAF
ALPILNKIDVSKREPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLR
AIRNGAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPAT
RQTVLFSATLPSSIRSIAERHLREPKHVKIQTKTQTVTAIEQAHLMVHADQKIPAVLRLL
EVEEFDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVI
ERVTGQKVAEARLPNAQAVLDARIKKLTSSLAPLVAEAEATHGELFDRLTTDLGCSARAL
ASALLRKATNGQALDLAAVEREQPLVPSFAPRGERTERGERGERPDRGDRERRAPLPLAE
GRVRCRTALGARDGIAAKNLLGAILNEGGLARDAIGRIQVRDSFSLVELPEDGLEKLLSK
LKDTRVAGKQLKLRRYRED
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggcttcgccgctctcgatcttaacccgaacattgttgctgcc
gttgtggctaccggctacgaagagccgtccgccattcagcaacaatcgatcccgatcatc
ctcgccggtcacgacatgatcggccaggcgcagactggcaccggcaaaaccgctgccttc
gccctgccgatcctgaacaagatcgatgtgagcaagcgcgaaccgcaagccctgatcctg
gcgccaacccgtgagttggcgctgcaagttgctaccgctttcgaaacctacgccaagcag
atgccgggcgtgaacgttgtcgccgtctacggtggtgccccgatgggcccacagctgcgt
gcgatccgcaacggcgcgcaaatcgtcgtggccaccccgggccgtctgtgcgaccacctg
cgtcgtgacgaaaaagtcttgtcgaccgtacagtacctggtactggacgaagccgacgag
atgctgaagctgggcttcatggacgacctcgaagtgatcttcgacgcaatcccggctacc
cgtcagaccgtactgttctccgctaccctgccgtcgtcgatccgttcgatcgccgagcgt
cacctgcgtgaacccaagcacgtcaagatccagaccaagacccagaccgttaccgcgatc
gagcaggcccacctgatggtccacgcggaccagaagatcccggctgtgctgcgtctgctg
gaagtggaagagttcgacgcgctgatcgccttcgtgcgtaccaagcaagccaccctggac
ctggccgccgcgctggaagccaaaggctacaaggctgctgcactgaacggcgatatcgcc
cagaaccagcgtgagcgcgtgatcgactcgctcaaggatggccgcctggacatcgtcgtc
gccaccgacgtcgctgcccgtggcctggacgtaccgcgcatcactcacgtgttcaacgtt
gacatgccgtacgacccagagtcctacgtacaccgtatcggccgtactggccgtgccggt
cgcgatggccgtgcactgttgctggttaccccgcgtgagcgccgcatgctgcaggtgatc
gagcgtgttaccgggcagaaggttgccgaagcgcgcctgccgaatgcccaggccgtgctg
gatgcccgcatcaagaagctgacctcgagcctggcgccgctggtagccgaagcagaagcc
acccacggcgagctgttcgaccgcctgaccaccgacctgggttgcagcgcgcgtgccctg
gcttcggccctgctgcgcaaggccaccaatggccaggcgctggacctggcggcggtagag
cgcgagcagccactggtgccgagcttcgccccgcgtggtgagcgtaccgagcgcggtgag
cgtggcgagcgtcctgaccgtggtgatcgtgagcgccgtgcaccgctgccgttggccgaa
ggccgcgtgcgttgccgtaccgccctgggtgcccgtgatggcatcgctgccaagaacctg
ctgggggcgatcctcaacgaaggtggcctggcgcgtgacgctatcggccgcatccaggtg
cgcgacagcttcagcctggtcgagctgccggaagacggcctcgagaagctgctgtccaag
ctcaaggacacccgcgtggctggcaagcagctgaagctgcgtcgctaccgcgaggattga
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