Pseudomonas sp. JY-Q: AA098_08240
Help
Entry
AA098_08240 CDS
T09824
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
psjy
Pseudomonas sp. JY-Q
Pathway
psjy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psjy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AA098_08240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psjy03019
]
AA098_08240
03009 Ribosome biogenesis [BR:
psjy03009
]
AA098_08240
Enzymes [BR:
psjy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AA098_08240
Messenger RNA biogenesis [BR:
psjy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AA098_08240
Ribosome biogenesis [BR:
psjy03009
]
Prokaryotic type
rRNA processing factors
AA098_08240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ANI33478
LinkDB
All DBs
Position
complement(1837240..1840515)
Genome browser
AA seq
1091 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKAPEGRVNIKEVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLTVPGDMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASLDRAAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALT
FIRQVMPQYASKVKLYEDSVPLFNRFQIESQIETAFQRVVDLPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERV
RECLEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCSGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDHLETPHF
EVQRLRDDNPEVLNNQSSYEIAAAEAEEAPQPTATRTLVRQEAAVKTAPARANAPVPAAA
EEPQPAAPVAPAPSAPEPSLFKGLVKSLVSLFAGKDEPAAAPVVPAAEKPAAERSPRNEE
RRNGRQQSRNRNGRRDEERKPREERAERAPREERAPREERAPREERAPREERAPREERAP
REERAPREERTPRQPREDRRSNRGEERVRELREPLDATPPAEREERQPREERVAREERAP
REERAPREERAPREERAPREERAPREERAPREERAPREERAPREERAPREERAPRPPREE
RQPRAAEEATEQAAELAEEQLPSEELLQDEQEGTDGERPRRRSRGQRRRSNRRERQRNAN
GELIDGSEEEGSEEQPQQHQATELGAELAAGLAVTAAVASSNISSDAEAQANQQAERATA
EVTAVAETDNSEAAQPVEQVEAVTKAEEASVAPAVEQPVTEPVAAAEATAEPVVEMAPQP
VAEDAPAVEPVVVAETVVTETPAEAPAVEAGEIEQAPAVVEVAPVAAQPAPVVEAQPEVV
AEPAPAVVEPAPAVVEPATVMLANGRAPNDPREVRRRKREAEAAAKAAQEAAAASQEPAL
EAADEHKPHHG
NT seq
3276 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcgactcaacccgaagagttgcgtgtagccctggtggac
ggccaacgtctctacgacctggacatcgagtccggcgcgcgcgagcagaaaaaggccaac
atctacaaaggcaagatcacccgcatcgaacccagcctcgaagccgccttcgtcgacttc
ggttccgaacgtcacggcttcctgccgctgaaagaaatctcccgcgagtacttcaagaag
gccccagaaggccgggtcaacatcaaggaagtgctcagcgaaggccaggaagtcatcgtt
caggtcgagaaggaagagcgcggcaacaaaggcgccgccctcaccaccttcatcagcctg
gccggccgctacctggtgctgatgcccaacaacccgcgtgccggtggcatctcgcgccgc
atcgaaggcgaagagcgcaacgaactgcgcgaagccctgaacggcctgactgtaccgggc
gacatgggcctgatcgtgcgcactgccggccttggccgcagcagcgaagaaatgcagtgg
gacctggattacctgctgcagctgtggaccgccatcaaggaagcgtccctggaccgcgcc
gcgccattcctgatctaccaggaaagcaacgtcatcatccgcgccatccgcgactacctg
cgccaggacatcggcgaagtgctgatcgacagcatcgacgcccaggaagaagcgctgacc
ttcatccgccaggtgatgccgcagtacgccagcaaggtcaagctgtacgaagacagcgtg
ccgctgttcaaccgcttccagatcgaaagccagatcgagaccgccttccagcgcgtggtc
gacctgccgtccggcggttcgatcgtgatcgacccgaccgaagccctggtgtccatcgac
atcaactcggcgcgcgccaccaaaggcagcgacatcgaagaaaccgccctgcagaccaac
ctggaagcggccgaggaaattgcccgccagctgcgcctgcgtgacatcggcggcctgatc
gtcatcgacttcatcgacatgaccccggcgaaaaaccagcgcgctgttgaagagcgcgtg
cgtgaatgcctggaagccgaccgcgcccgcgtgcaggttggccgcatctcgcgcttcggc
ctgctggaaatgtcccgtcagcgtctgcgcccatcgctgggcgaaagcagcggcatcgtc
tgcccacgctgctccggcaccggcatcatccgtgacgtcgaatcgctgtcgctggccatc
ctgcgcctgatcgaagaagaagccctgaaggaccgcaccgccgaagtacgtgctcaagtg
ccgatcccggtagccgcgttcctgctgaacgaaaagcgtaactcgatcaccaagatcgag
ctgcgcacccgcgcgcgcatcatcatcctgccgaacgaccacctggaaaccccgcacttc
gaagtccagcgcctgcgcgacgacaaccctgaagtgctgaacaaccagtccagctacgaa
atcgccgccgccgaagctgaagaagcgccgcagccgaccgccacccgcaccctggtacgc
caggaagccgcagtgaagacggccccggcccgcgccaacgcaccggtaccggccgccgct
gaagagccccagcctgccgccccggtcgcccctgccccgagcgctccggagccaagcctg
ttcaagggcctggtgaagtcgctggtgagcctgttcgccggcaaggacgagcctgccgcc
gcgccagtggtgcccgccgccgaaaaaccggctgccgagcgcagcccgcgtaacgaagaa
cgccgcaacggccgccagcaaagccgcaaccgcaacggccgccgcgacgaagaacgcaaa
ccgcgtgaagagcgtgccgagcgcgcaccgcgcgaggaacgcgccccacgcgaagaacgt
gcaccgcgtgaggagcgtgccccacgtgaagaacgtgcaccgcgtgaggaacgtgcccca
cgtgaagagcgtgcaccgcgtgaagaacgtactccgcgccagccacgcgaagaccgccgt
agcaaccgcggcgaagagcgcgttcgcgagctgcgcgaaccgctggacgccaccccgcca
gccgaacgcgaagagcgccagccgcgtgaagaacgtgtagcccgcgaagagcgtgctcca
cgcgaagaacgcgcacctcgcgaagaacgtgcgccacgtgaagaacgcgcaccgcgtgaa
gaacgtgctccacgtgaagaacgcgcaccgcgtgaagaacgtgctccacgtgaagagcgc
gcacctcgggaagaacgcgccccacgtgaagagcgcgccccgcgcccaccacgcgaagaa
cgccaaccacgcgctgccgaagaagcaaccgagcaggctgccgaactggccgaagagcaa
ctgccaagcgaagagctgctgcaagacgagcaggaaggcaccgatggcgagcgcccacgc
cgccgctcccgtggccagcgtcgtcgcagcaaccgtcgtgagcgtcagcgcaatgccaat
ggcgagctgatcgacggcagtgaagaagaaggcagcgaagagcagccacaacagcaccag
gccaccgagctgggtgccgaactggctgccggccttgccgtgacggctgctgtcgccagc
agcaacatcagctccgacgcagaagcccaggccaaccagcaggccgagcgtgctactgcc
gaagtcactgccgttgcagaaaccgacaacagcgaagccgcccaaccggtcgagcaggtc
gaagcggtcaccaaagctgaagaagcgtccgtggccccagcggtcgagcagccggtcacc
gagccagtggccgcagccgaggcaactgccgagcctgtggtcgaaatggccccgcagcct
gtcgctgaagatgcacctgctgttgagccggtcgtagttgcagaaaccgtggtcactgaa
accccagcagaagccccagcggtagaagccggtgagatcgaacaggccccggccgtggtc
gaagtcgctccggttgccgcacagcctgccccggttgtcgaagcccagccagaagtggtg
gccgagcctgcacctgcggtggtcgaacctgcacctgcagtggtcgaacctgccactgtc
atgctggccaacggccgtgcaccgaacgacccacgtgaagtgcgtcgccgcaagcgggag
gccgaggctgctgccaaagcggcacaggaagctgctgcagcttcccaggaaccagccctg
gaagccgccgatgagcacaaacctcatcacggctga
DBGET
integrated database retrieval system
