Pseudomonas sp. JY-Q: AA098_08655
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Entry
AA098_08655 CDS
T09824
Name
(GenBank) exonuclease SbcD
KO
K03547
DNA repair protein SbcD/Mre11
Organism
psjy
Pseudomonas sp. JY-Q
Brite
KEGG Orthology (KO) [BR:
psjy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psjy03400
]
AA098_08655
DNA repair and recombination proteins [BR:
psjy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AA098_08655
Archaeal homologous recombinant proteins
AA098_08655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SbcD_C
Metallophos
Metallophos_2
Motif
Other DBs
NCBI-ProteinID:
ANI33549
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All DBs
Position
complement(1927482..1928720)
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AA seq
412 aa
AA seq
DB search
MRLFHTSDWHLGQSLHGQERDFEHACFLDWLLGQLRLRQPDALLIAGDIFDTVNPPVKAQ
ERLYDFIVQAHEQQPKLDIVMIAGNHDSGSRIELPAALMRRLRTHALGRVHWLDEGQLDA
ERLLIPLTNGRGKVAAWCLALPFLRPAEVTGPQLGDDYLQGITQVHQQLIAAALKKRKKD
QALIAISHAHMAGGAVSEDSERSLIIGNAEALPAKLFDKAISYVALGHLHKPQKVNREER
IRYSGSPIPLSFAEINYPHQVLEVELDGNGLVSVEPRPVPRAVALQRVGPAPLGELLQQL
ADLPVVDLLEDPNRQPWLEVRVMLDEPQPDLRQQIETALEGKAVRLIRISAEYAGRNNAE
DDDLAFVELAQMTPQDLFSRAWEQAYGNPADEQALADFALLLQDVQQEEEQP
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atgcgtctgtttcatacctccgactggcacctgggccaaagcctgcacggccaggaacgc
gacttcgaacacgcctgcttcctcgactggctgctcggccagctgcgcctgcgccagccg
gatgcgctgctgattgcgggcgacatcttcgacaccgtcaacccacccgtcaaagcccag
gaacgcctctacgacttcatcgtccaggcccatgagcaacagcccaagctggacattgtg
atgatcgccggcaaccacgactccggttcccgcatcgagctgcccgccgcactcatgcgc
cgcctgcgcacccatgcgttgggccgtgtgcactggctggacgagggtcagctggatgcc
gagcgcctgttgattccgttgaccaacggccggggcaaggtcgctgcctggtgcctggcc
ctgcccttcctgcggccggccgaagtcaccggcccgcagctgggtgacgattacctgcaa
ggcatcacccaggtgcaccagcaactgatcgccgccgccctgaagaaacgcaagaaagac
caggcgctgatcgccatcagccacgcgcacatggccggtggcgcggtgtcggaagactcc
gaacgcagcctgatcatcggcaacgccgaggcactgccggccaagctgttcgacaaagct
atcagctacgtcgccctgggccatctgcacaagccgcagaaggtcaaccgcgaagaacgc
atccgctacagcggctcgccaatcccgctgtcgttcgccgaaatcaactacccgcaccag
gtcctggaagtggagctggacggcaacggcctggtcagcgtcgagccacgccccgtacca
cgcgccgtggccctgcaacgggtgggcccggcaccactgggcgagctgttgcagcaactg
gccgacctgcccgtggtcgacctgcttgaagaccccaaccgccagccctggctggaggtg
cgggtgatgctcgacgagccgcaacccgacctgcgccagcagatcgaaaccgcgcttgaa
ggcaaggcggtacggctgatccgcatcagcgccgagtacgccggccgcaacaatgccgag
gacgatgacctggcctttgtcgaactggcccagatgaccccgcaagacctgttcagccgc
gcctgggagcaagcctacggcaaccccgccgacgagcaggcgctggccgacttcgccctg
ctgttgcaggacgtgcagcaggaagaggaacagccatga
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