Pseudomonas sp. JY-Q: AA098_09190
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Entry
AA098_09190 CDS
T09824
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
psjy
Pseudomonas sp. JY-Q
Pathway
psjy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psjy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AA098_09190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psjy03400
]
AA098_09190
Enzymes [BR:
psjy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AA098_09190
DNA repair and recombination proteins [BR:
psjy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AA098_09190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ANI33648
LinkDB
All DBs
Position
complement(2060271..2063720)
Genome browser
AA seq
1149 aa
AA seq
DB search
MSVLRLPQMSATAGKQTWGNLPGAALSLAIAEAASSAGRFTLLLTADSQAADRLEQELRF
FAPDLPVLPFPDWETLPYDLFSPHQDIISQRIASLYRLPELSHGILVVPITTALHRLAPT
RFLLGSSLVLDVGQTIDVEQMRLRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPY
RIDLFDNEIETLRTFDPETQRSIDKVDSVRLLPAREFPMQKEEVTRFKARFRERFDVDFR
RSAIFQDLASGIIPAGIEYYLPLFFEETSTLFDYLPTDTQVFSLPGVEQAAEHFWNDVRG
RYEDRRGDLSRPLLPPAELFLPVEDCFARLKQWPRVVVSSEALEPGVGRERFPARALPNL
AIEAKANQPLAELANFLDQFPGRVLFTAESAGRREVLLELLERLKLRPHTVEGWDDFITG
AERLAITIAPLDDGLLLDDPGLALIAESPLFGQRVMQRRRRDKRGETANDAVIKNLTELR
EGAPVVHIDHGVGRYLGLATLEIDGQAAEFLTLEYAENAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSEAWQKAKRKAAEQVRDVAAELLDIYARRAARKGYAFADPSADYATFSAGFP
FEETPDQQAAIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVLVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVAAAAADLAEGKIDILIGTHKLLQDDV
RFKDLGLAIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIVIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPTRQKVSADAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGEGQSGQIQAVGFTLYMEMLERAVKAIRKGTQPNLEQPLGGGPEINLRLPALIPEDYLP
DVHARLILYKRIASAADEEGLKDLQVEMIDRFGLLPEPTKNLMRLTSLKLHAEKLGIKKV
DAGPNGGKLEFEAETPVDPLTLIKLIQGQPKRYKFEGATQFRFLVPMERPDERFNTLEAL
FERLTPQPA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgtcagttctgcgcctaccgcaaatgtcggccacggccggcaaacaaacctggggcaac
ctgcccggtgccgccctcagccttgccatcgccgaagccgccagcagcgctggccgcttc
accctgctgctgacggccgacagccaggccgccgaccgtctggagcaggagctgcgcttc
tttgccccagacctgccagtgctgccgttccccgattgggaaaccctgccctacgacctg
ttctcgccgcaccaggacatcatctcccagcgcatcgccagcctgtaccgtctgccggag
ctgagccacggcatcctcgtggtgccgatcaccaccgccctgcaccgcctggcacccacg
cgttttctgctgggcagcagcctggtgctggatgtgggccagaccatcgacgtggaacag
atgcgcctgcgcctggaggccagcggttaccgttgtgtcgacaccgtctacgagcatggc
gagttcgccgtgcgcggcgcgctgatcgacctgttcccgatgggcagcaagctgccctac
cgcatcgacctgttcgataacgagatcgaaacgctgcgcaccttcgaccccgagacccag
cgctcgatcgacaaggtggattcggtgcgcctgctgccagcacgcgaattcccgatgcag
aaggaagaagtgacccgcttcaaggcacgctttcgcgagcgcttcgacgtcgacttccgc
cgcagtgcaatcttccaggacctggccagcggcatcatccccgccggtatcgagtactac
ctgccgctgttcttcgaagaaacctcgaccctgttcgactacctgccgaccgacacccag
gtgttctcgctacccggtgtggaacaggccgccgagcacttctggaacgacgtgcgcggg
cgctatgaagaccgccgcggcgacctcagccggccgctgttgccgccggccgagctgttc
ctgccggtggaagattgcttcgcccggctcaagcagtggccccgggtggtggtcagcagc
gaagcgctggagcctggcgtgggccgcgagcgcttcccggcgcgcgccttgcccaacctg
gccatcgaggccaaggccaaccagccgctggccgagctggccaacttcctcgaccagttc
cccggccgcgtgctcttcaccgccgaatcagcgggccgccgggaagtgctgctggaactg
ctcgaacggctgaagctgcgcccgcataccgtcgaaggctgggacgatttcattaccggt
gccgagcgcctggcgatcaccatcgccccgctggacgacggcctgctgctggacgatcca
gggctggccctgattgccgaaagcccactgttcggccagcgagtgatgcagcgccggcgc
cgtgacaagcgcggcgaaaccgccaacgacgcggtcatcaagaacctcaccgagctgcgc
gaaggtgcgccggtggtgcacatcgaccatggcgtcgggcgctacctgggcctggccacc
ctggaaatcgacggccaggctgccgaattcctgacactggaatacgccgagaacgccaag
ctgtatgtgccggtggccaacctgcacctgatcgcccgctacaccggcagcgacgacgcc
ctggcaccgttgcaccggctgggttcggaggcctggcagaaagccaagcgcaaggccgcc
gaacaggtccgcgacgtggccgccgaactgctcgacatctatgcccgccgcgccgcgcgc
aagggctacgcgtttgccgacccgtccgccgactacgccactttcagcgccggcttcccg
ttcgaggaaaccccggaccagcaggccgccatcgaggccgtgcgcgccgacatgctggca
cccaagccaatggaccgcctggtctgcggcgacgtgggcttcggcaagaccgaagtggcc
atgcgtgcggcgttcatcgccgtgcacagtggccgccaggtggccgtactggtgcccacc
accctgcttgcccagcagcattacaacagcttccgcgaccgctttgccgactggcccgtg
accgtggaagtgatgagccgcttcaaatcggccaaggaagtggccgccgccgccgcggac
cttgccgaaggcaagatcgacatcctcatcggcacccacaagctgctgcaggacgacgta
cgcttcaaagacctgggcctggccatcatcgatgaagagcaccgctttggcgtgcgccag
aaagaacagttgaaggcgctgcgcagcgaggtcgatatcctcaccctgaccgccacgccg
attccgcgcacgctgaacatggcggtggcgggcatgcgcgacctgtcgatcatcgccaca
ccgccagcacgccgcctgtcggtgcgcaccttcgtcatggaacagaacaagagcacggtc
aaggaggcgctgctgcgcgaactgttgcgcggtggccaggtgtattacctgcacaacgat
gtgaaaaccatcgaaaaatgcgccgccgaccttgccgagctggtgcccgaggcacgcatc
ggcatcggccacgggcaaatgcgcgaacgcgagctggaacaggtgatgagcgatttctac
cacaagcgtttcaacgtgctggtggcctcgaccattatcgaaaccggtatcgacgtgccc
agcgccaacaccatcgtcatcgagcgcgccgacaagttcggcctggcccagctgcaccag
ctgcgtggccgggttggccgtagtcaccaccaggcctacgcctacctgctcacacctacc
cgtcagaaggtgagcgccgacgccgaaaagcgcctggaggcgatcgccaacacgcaagat
cttggcgcaggctttgtgctggccaccaacgacctggaaatccgcggtgccggcgagctg
ctgggcgaaggccagagcgggcagatccaggcagtgggcttcaccctgtacatggaaatg
ctcgaacgtgcggtcaaggcaatccgaaaaggtacccagccgaaccttgagcaacccctg
ggtggcggcccggagatcaacctgcgcctgccggcactgatccccgaggactacctgcct
gacgtgcatgcgcgcctgatcctgtacaaacgcattgcctcggctgccgacgaggagggc
ctcaaggacttgcaggtcgagatgatcgaccgcttcggcttgctgccagagccgaccaag
aacctgatgcgcctgacgtcactcaagctgcacgcggaaaagctcggcatcaagaaagtc
gatgcggggcccaacggtggcaagctcgagttcgaagccgaaacaccggtcgacccactg
accctgatcaagctgatccagggtcaacccaaacgctacaagttcgaaggcgccacccag
ttccgcttcctggtaccgatggaacgccccgacgaacgtttcaataccctggaggcgctg
ttcgagcgcctgaccccacagcctgcctaa
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