KEGG   Pseudomonas sp. JY-Q: AA098_11855
Entry
AA098_11855       CDS       T09824                                 
Name
(GenBank) RNA polymerase sigma factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
psjy  Pseudomonas sp. JY-Q
Pathway
psjy02020  Two-component system
Brite
KEGG Orthology (KO) [BR:psjy00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    AA098_11855
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:psjy03021]
    AA098_11855
Transcription machinery [BR:psjy03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     AA098_11855
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_ECF Sigma70_r4 PhyR_sigma-like HTH_23 DUF6362
Other DBs
NCBI-ProteinID: ANI34141
LinkDB
Position
2609588..2610100
AA seq 170 aa
MIDAAPPPEPGLPALYREHRGWLETWLRRRMGNAWDAADLSQDTFLRILASAQPLADIRE
PRAYLLTVGKRLLSNFHQRRSLERAYLDALAQLPEQHVPSPEQRWVLLETLQALDELLDG
LKPPIRKAFLWSQLEGLGYAEIGQRLGVCQRSVKRYMAQAYEHCLLAELQ
NT seq 513 nt   +upstreamnt  +downstreamnt
atgatcgacgccgcgccgccaccggagcctggcctgcctgccctgtaccgggagcatcgc
ggctggcttgaaacctggctgcgccggcgtatgggcaatgcctgggatgccgccgacctc
agtcaggatacttttctgcgcattctggccagcgcccagccgctggcagacatacgcgaa
ccgcgtgcctacctgctgaccgtgggcaagcgtttgctcagcaacttccaccagcgccgt
agcctggagcgggcctaccttgatgccttggcgcagttgcccgagcaacacgtgccgtcg
ccagaacagcgctgggtactgctcgaaaccctgcaagcactggatgaattgctcgacggc
ctcaagccgccgatacgcaaggcctttctctggagccagctggaaggcttgggctacgcc
gagattggccagcgcctgggcgtctgccagcgctcggtgaaacgctacatggcgcaggct
tacgaacattgcctgttggccgagttgcaatga

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