Pseudomonas sp. JY-Q: AA098_20465
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Entry
AA098_20465 CDS
T09824
Name
(GenBank) RNA helicase
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
psjy
Pseudomonas sp. JY-Q
Brite
KEGG Orthology (KO) [BR:
psjy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
psjy03009
]
AA098_20465
Enzymes [BR:
psjy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AA098_20465
Ribosome biogenesis [BR:
psjy03009
]
Prokaryotic type
rRNA helicases
AA098_20465
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ANI35749
LinkDB
All DBs
Position
complement(4540271..4541632)
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AA seq
453 aa
AA seq
DB search
MQLNFPHLSEVTSVFSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTG
SGKTAAFVLPLLNRLVDLSGPRVEIRALILLPTRELAQQTLKQVQLFSQFTYIKSGLVTG
GEDFKEQAAMLRKVPDVLIGTPGRLLEQLNAGNLDLSHVQVLILDEADRMLDMGFAEDME
RLCKECENREQTLLFSATTGGAALRDIIGKVLKDPEHLMLNSVSQLAEGTRQQIITADHD
QHKEQIAQWLLANETFDKAIIFTNTRAMADRIYGHLVAKDVKAFVLHGEKDQKDRKLAIE
RFKQGSSKVLVATDVAARGLDIDGLDLVINFDMPRSGDEYVHRVGRTGRAGGEGLAISLI
THNDWNLMSSIERYLKQQFERRVIKEVKGTYNGPKKVKASGKAAGSKKKKVEKKTGDKKA
AAKRKPTAKPKANAPLASADGLAPLKKRKPAAE
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgcaactgaatttcccgcacttgtctgaggttacctccgtgttctcccaattcgccctg
catgaacgcctgcttaaagccgtggccgagcttaaatttgtcgagccaaccccggtgcag
gccgcggccatccccctggccctgcaagggcgggatctgcgtgtgactgcgcagaccggc
agcggcaagacggcggccttcgtactgccactgctcaaccgtctggtcgacctcagcggt
ccgcgtgtcgagattcgcgcgttgatcctgctgccgacccgtgagctggcccagcaaacc
ctcaagcaggtgcagctgttctcgcagttcacctacatcaagtcgggcctggtgactggc
ggcgaagacttcaaggaacaggccgccatgctgcgcaaggtgcccgacgtgctgatcggc
accccgggtcgcctgctcgagcagctcaatgccggcaacctcgacctgtcccacgtgcag
gtcctgatcctggacgaagccgaccgcatgctcgacatgggctttgccgaagacatggag
cgcctgtgcaaagagtgcgagaaccgcgagcagaccttgctgttctcggctaccaccggt
ggcgcggccctgcgcgacatcatcggcaaggtgctgaaagaccctgagcacctgatgctc
aacagtgtctcgcaactggctgaaggcacccgccagcagatcatcaccgccgaccacgac
cagcataaagagcagatcgcgcagtggttgctggccaacgaaaccttcgacaaggcgatc
atcttcaccaacacccgcgccatggccgaccgcatctacggtcacctggtggccaaggac
gtgaaggccttcgtgctgcatggcgaaaaggaccagaaggaccgcaagctggccatcgag
cgcttcaagcagggcagctccaaagtgctggtggcgaccgacgtggcagcccgtggcctg
gatatcgacggcctggacctggtgatcaacttcgacatgccacgcagcggtgacgagtac
gtccaccgtgtgggccgtaccggccgtgccggtggcgaaggcctggcgatctcgctgatc
acccacaacgactggaacctgatgtcgagcatcgagcgctacctcaagcagcagttcgag
cgccgggtcatcaaggaagtgaagggcacctacaacgggccgaagaaggtcaaggcctcg
ggcaaggcggccggcagcaagaagaaaaaggtcgagaagaagaccggcgacaagaaagct
gccgccaagcgcaagcctactgccaagccgaaggccaacgcgcctctggccagtgcagat
ggcctggcgccactgaagaagcgcaagcctgctgctgaataa
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