Pseudomonas gorinensis: U771_08955
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Entry
U771_08955 CDS
T02969
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
psk
Pseudomonas gorinensis
Pathway
psk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
U771_08955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psk03400
]
U771_08955
Enzymes [BR:
psk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
U771_08955
DNA repair and recombination proteins [BR:
psk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
U771_08955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
AroM
Motif
Other DBs
NCBI-ProteinID:
AHC34333
LinkDB
All DBs
Position
complement(1933254..1936703)
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELAHGVLVVPITTALHRLAPT
KFLLGSSLVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPENQRSIDKVESIKLLPAREFPLQKDAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFDETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKNWPRVVASQQDVEPGVGRERFPAHVLPDL
AIQAKANQPLEALSNFLGDFSGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVAS
KDRLAITIAPLDEGLLLDDPALALIAESPLFGQRVMQRRRREKRADANNDAVIKNLTELR
EGAPVVHIDHGVGRYLGLQTLEIDNQAAEFLTMEYAEGAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFA
FEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAVADLAEGKIDIVIGTHKLLSDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAAELAELVPEARI
AIGHGQMRERDLEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITGDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLDQPLGGGPEINLRLPALIPEDYLP
DVHARLILYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLVRLTLLKLQAEQLGIKKV
DAGPQGGRIEFEAQTPVDPLVLIKLIQGQPNRYKFEGATLFKFMVPMERAEERFNTLEAL
FERLIPKSV
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgttctgcgtctaccgctactccctgccgcggcaggtaaacagcactggggcaac
ctgcccggtgccgccctgagcctggccattgccgaggctgccagcgcagccaagcgcttt
accctgctgctcaccgccgacagccaaagcgccgaacggttggagcaggagctgagcttc
ttcgcccccgatttgccggtgctgcattttcctgactgggaaaccctgccctacgatctg
ttctcgccgcaccaggacatcatctcccagcgcatcgccagcctgtaccgcctgccggaa
ctggcccacggcgtgctggtggtgccgatcaccaccgccctgcaccgcctggcgccgacc
aagttcctgctgggcagcagcctggtgctggatatcggccagaagctcgatgtggaacag
atgcgcacgcgcctggaagccagcggctaccgttgcgtcgacacggtgtacgaacacggt
gagttcgcggtacgcggtgcgctgatcgacctgttcccgatgggcagcaagttgccgtac
cgcatcgacctgttcgatgacgaaatcgagaccctgcgcaccttcgacccggagaaccag
cgctccattgataaagtcgagtcgatcaagctgctgccggcacgggaattcccgctgcaa
aaggacgcggtgacccgcttcaaggcgcgctttcgtgagcgcttcgacgtcgacttccgt
cgctgcccgatcttccaggacctgagcagcgggattaccccggccggtatcgagtactac
ctgccgctgttcttcgacgaaacctccaccctcttcgattacctgcctcaggacactcag
gtgttctcgctgcctggcatcgagcaagcggcggaaaacttctggaacgatgtgcgcaac
cgctatgaagaacgccgcgtcgatccatcccgtcctttattaccgcccgccgagctgttc
ctgccggtggaagactgcttcgcccgcctgaaaaactggccgcgcgtggtcgccagccaa
caggacgtggagcccggcgtcggccgtgagcgcttccccgcgcacgtgctgccggacctg
gcgatccaggccaaggccaaccagcccctggaagcactgtccaacttccttggcgacttc
tctggccgcgtgctgtttaccgccgaatccgccggccgtcgcgaagtcctgcttgaactg
ctcgaacgcctgaagctgcgtccgaaaaccgtcgacagctggccggacttcgtcgccagc
aaggaccgcctggcgatcactatcgcgccactggatgaaggtttgctgctggacgatccg
gccctggcgctgatcgcggaaagccccctgttcggccagcgcgtgatgcaacgtcgccgt
cgcgaaaaacgcgccgacgccaacaacgacgcggtaatcaagaacctcaccgagctgcgc
gaaggcgcgccggtggtgcatatcgaccacggtgtcggtcgctacctgggcctgcagacc
ctggaaatcgacaaccaggccgccgaattcctcaccatggagtacgccgaaggcgccaag
ctctatgtaccggtggccaacctgcacctgatcgcgcgctacaccggcagcgacgacgct
ctggcgccattgcaccgcctgggctccgaaacctggcagaaagccaagcgcaaggccgcc
gaacaggtgcgcgacgtcgccgccgagttgctcgacatctatgcgcggcgtgcggcgcgc
gaaggctacgcgttcgccgacccgaaagccgactacgccaccttcagcgccggcttcgct
tttgaagaaaccccagaccagcaaaccaccatcgaagctgtgcgcgccgacatgctcgcg
cccaagccgatggaccgcctggtgtgcggcgacgtgggctttggcaagaccgaagtggcc
atgcgcgcagccttcatcgcggtgcacggcggcaaacaagtggcgatcctggtacccacc
accctgctcgcccagcagcactacaacagcttccgcgaccgctttgccgactggccggtg
accgtggaagtgatgagccgcttcaagtcggccaaggaagtgaatgccgccgtcgccgac
ctggcggaaggcaagatcgacatcgtgatcggtacgcacaagctgttgtcggacgatgtg
aagatcaagaacctgggcctggtgatcatcgacgaagaacaccgcttcggggtgcgccag
aaagaacagctcaaggccctgcgcagcgaggtggacattctcaccctcaccgccacaccg
attccgcgcacgctgaacatggcggtgtcgggcatgcgcgacctgtcgatcatcgccacg
ccgccggcacgccgactgtcggtgcgcaccttcgtgatggagcagaacaaaagcacggtc
aaggaagccctcctgcgcgaattgctgcgcggcggccaggtgtactacctgcacaacgac
gtgaagaccatcgagaaatgcgcggccgaactcgccgaactggtgccggaagcacgcatt
gccatcggccatgggcagatgcgcgaacgcgatctcgaacaggtgatgagcgacttttat
cacaagcgcttcaacgtgctgatcgcctcgaccatcatcgagaccggcatcgacgtgccg
agcgccaacaccatcatcatcgaacgcgcggacaagttcggcctggcacaacttcatcag
ttgcgcggccgggtcgggcgcagtcaccaccaggcgtatgcctacctgctgacaccaccg
cgccaacaaattaccggcgacgccgaaaagcgcctggaagccatcgccaacacccaggac
ctcggtgccggttttgtgctggccaccaacgacctggaaatccgcggcgccggcgaactg
ctcggcgatggccagagcgggcagatccaggccgtgggtttcaccctctatatggagatg
ctcgaacgcgcggtgaaagccatccgcaagggcgagcaaccgaacctcgaccaacccctg
ggcggtggcccggagatcaacctgcgcctgccggcgttgattcccgaggactacctgccg
gacgtgcatgcgcggttgatcctgtacaagcgcatcgcctcggccaccgacgaagaaggc
ctcaaggacctgcaggtggaaatgatcgaccgcttcggcctgttgcccgagccgaccaag
aacctggtgcgcctgaccttgctcaaattgcaggccgagcaactggggatcaagaaggtc
gacgcggggccgcaaggcgggcgcatcgagttcgaagcgcagacgccggtggacccgttg
gtactgatcaagttgatccagggccagcccaaccgctacaagttcgaaggggctacgctg
ttcaagttcatggtgccgatggagcgcgccgaagaacgcttcaataccctggaggcgctg
ttcgagcgcctcatcccgaaatctgtttga
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integrated database retrieval system
