Pseudomonas gorinensis: U771_09705
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Entry
U771_09705 CDS
T02969
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psk
Pseudomonas gorinensis
Pathway
psk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U771_09705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psk03019
]
U771_09705
03009 Ribosome biogenesis [BR:
psk03009
]
U771_09705
Enzymes [BR:
psk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
U771_09705
Messenger RNA biogenesis [BR:
psk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
U771_09705
Ribosome biogenesis [BR:
psk03009
]
Prokaryotic type
rRNA helicases
U771_09705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
AHC34484
LinkDB
All DBs
Position
2095372..2097045
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AA seq
557 aa
AA seq
DB search
MTQETGGFAAFNLNPNILAAVIATGYEEPSAIQQQSIPIIMAGQDMIGQAQTGTGKTAAF
ALPILHCIDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPPT
RQTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLAPLVADAESTHGDLLDRLTADIGCTPRAL
AAALLRKATNGQALTLAAIEKERPLVPNSAPRGDRPERSGDRPDRGDRERRAPVPLAEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEKLLTKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggcttcgccgcttttaatcttaacccgaacattcttgctgcc
gtcattgcgaccggctacgaagaaccttcggcgattcagcagcaatcgatcccgatcatc
atggccggccaggacatgattggccaggcgcaaaccggtaccggcaaaaccgccgcgttc
gccctgcctatcctgcactgcatcgatcctgccaagcgcgaaccgcaagccctgatcctg
gcgccaactcgtgagttggcgctgcaagtagcaaccgcttttgaaacctacgccaagcaa
atgccgggcgttaccgttgtggccgtctatggcggtgcgccaatgggcccacaactgaaa
gcaatccgtaatggcgcacagatcgttgtcgccaccccgggtcgcctgtgtgaccacctg
cgtcgtgacgagaaagtcctgtcgaccgtgaaccacctggttctggacgaagctgacgaa
atgttgaagctgggcttcatggatgacctggaagtcatcttcaaggcgctgccaccgacc
cgtcagaccgtactgttctcggccaccctgccacagtcgatccgtgccattgccgaacgc
catctgcgcgatccgcaacacgtgaagatccagaccaagacccagaccgttaccgcgatc
gaacaggctcacctgttggttcacgctgaccagaagacctcggctgtattgagcttgctg
gaagtcgaagacttcgacgccctgatcatgttcgtgcgcaccaagcaagcgaccctggac
ctggccagtgccctcgaagccaaaggctacaaagccgctgcgctgaacggtgacatcgcc
cagaaccaacgtgagcgcgtgatcgactccctcaaggatggccgtctggacatcgttgtg
gcgaccgacgttgctgcccgtggcctcgacgttccacgtatcacccacgtgttcaacgtt
gacatgccttacgatccagagtcctacgttcaccgtattggccgtactggccgtgccggt
cgcgaaggtcgtgcactgctgctggtgactccgcgtgagcgccgcatgctgcaagtgatc
gagcgtgtcaccggccagaaggttgccgaggtccgcctgccggatgcccaggccgttctc
gatgcccgcatcaagaaactgaccaacagcctggcgccgctggtggctgacgctgagtcg
acccacggcgacctgctggaccgcctgaccgccgatatcggttgcaccccgcgtgccctg
gccgcagccctgctgcgcaaggccaccaacggtcaggccctgaccctggcagccatcgag
aaagaacgtccactggttccgaacagcgcgccacgcggtgatcgtccagagcgttcgggc
gaccgtccagaccgtggtgatcgtgagcgtcgtgctccggtcccattggctgaaggtcgt
gctcgttgccgtaccgcgctgggcgcgcgtgacggtatcgcggccaagaacctgctgggc
gctatcctcaacgagggtggcctggcacgtgaagccatcggtcgtatccaggtccgtgac
agcttctccttggtggaactgccggaagacggtctggaaaaactgctgaccaagctgaaa
gacactcgcgttgccggtaagcagctcaaactgcgtcgctaccgcgaagattga
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