Pseudomonas gorinensis: U771_23265
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Entry
U771_23265 CDS
T02969
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
psk
Pseudomonas gorinensis
Pathway
psk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U771_23265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psk03019
]
U771_23265
03400 DNA repair and recombination proteins [BR:
psk03400
]
U771_23265
Enzymes [BR:
psk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
U771_23265
Messenger RNA biogenesis [BR:
psk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
U771_23265
DNA repair and recombination proteins [BR:
psk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
U771_23265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
HTH_40
HTH_23
GerE
HTH_29
Motif
Other DBs
NCBI-ProteinID:
AHC37144
LinkDB
All DBs
Position
complement(5126779..5128905)
Genome browser
AA seq
708 aa
AA seq
DB search
MLEQAQRVLKDIFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQVPALLRNGLA
VVVSPLIALMDDQVATLEELGVAAASLNSTLSAEQQRDLAARIKRGEVKMLYLAPERLVQ
PRMLAFLQSLEIALFAIDEAHCVSQWGHDFRREYLQLGQLAELFPDVPRIALTATADKRT
REEIVERLHLQNAERFLSSFDRPNIFYRIVPKEQPRKQLLAFLSERRSDAGIVYCLSRKK
VDEVAAFLCEQGYPALPYHAGLPNETRSAHQKRFLNEEGLIMVATIAFGMGIDKSNVRFV
AHMDLPKSLEAYYQETGRAGRDGLPADAWMVYGLQDVVMLKQMLQNSEGDERHKRLEQHK
LDAMLSLCEETRCRRQTLLAYFDEDMPEPCGHCDNCVDGVQTWDATEPARQGLSAIYRTG
QRYGVGHLVDVLLGKDNEKVRSFGHEKLSVYGVGKARAEGEWRSLFRQMVARGLVDIDIE
GYGGLRLNDSCRPLLKGEVSLELRRDLKPQTTAKSSTSQASQLVRGEEREQWEALRTLRR
KLAQEHSVPPYVIFPDSTLLEMLREQPTTLAEMARVSGVGARKLERYGQAFLEVLGGQAE
APKEVADIRHELISLARAGMTPIQIAGQLQCSEKNVYTLLAESIGKQQLSLEQALDLPED
LLGEIQDAFLDGEGELPAVSEIAPLFTGRVPEGVLYCVRAALQSEFEI
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgctcgagcaggctcaacgcgtcctcaaggacatcttcggctacgacagttttcgtggc
cgccagggtgcgatcattgagcgcgtggccagtggcggtgatgccctggtcctgatgcct
accggcggcggcaagtcgttgtgtttccaggtgcccgccttgctgcgtaacggcctggcc
gtggtggtgtcgccgttgattgcgttgatggacgaccaggtggcgaccctggaggaactc
ggtgtggcggccgcgtcattgaactccaccctcagcgccgaacagcagcgcgacctggcc
gcgcgcatcaagcgcggcgaagtgaaaatgctctacctcgccccagagcgcctggtgcag
ccacgcatgctggccttcctgcaaagcctggaaatcgccctgttcgccatcgacgaagcc
cactgcgtttcgcaatgggggcacgatttccgtcgcgaatacctgcaattgggccagttg
gcagagttgttccccgacgtcccgcgcatcgcgctgaccgccaccgccgacaagcgcacc
cgcgaagagattgtcgagcgcctgcatttacagaatgccgagcgcttcctgtcgagcttc
gaccgaccgaatattttctaccgcatcgtgcccaaggagcagccacgcaagcagttgctg
gcgttcctgtccgagcggcgcagcgatgcgggcattgtctattgcctgtcgcgcaagaaa
gtcgatgaagtggccgccttcctgtgcgagcagggttacccggcgctgccgtaccacgcc
ggcctgcccaatgaaacgcgctccgcccaccagaaacgcttcctcaacgaggaaggcctg
atcatggtggcaaccatcgccttcggcatggggatcgacaagtccaacgtgcgcttcgtg
gcgcatatggacctgcccaagtccctcgaggcttactaccaggaaactgggcgtgccggc
cgtgacggcctgccagcggatgcctggatggtctacggcctgcaagacgtggtgatgctc
aagcagatgctgcagaactccgagggtgacgaacgccacaagcgcctggaacagcacaag
ctcgacgccatgttgtcgctgtgcgaagagacgcgctgccgccgccagaccctgttggcg
tacttcgacgaagacatgcccgagccgtgcggtcactgtgacaattgcgtcgacggcgta
cagacctgggacgccaccgaaccggcacgccaggggttgtcagcgatctaccgtactggc
cagcgttatggcgtgggccatctggtggacgtattgctgggcaaagacaacgaaaaagtg
cgcagcttcggtcacgaaaaactctcggtctatggcgtcggcaaggcacgggccgaaggc
gagtggcgttcactgttccgacagatggtcgcgcgcggcctggttgatatcgacatcgag
ggctacggcggcctgcgcctgaacgacagttgccggccgctgctcaagggcgaagtgagc
ctggaactgcgtcgcgacctcaagccgcaaaccaccgccaagagcagcaccagccaggcc
agccaactggtgcgtggcgaagaacgcgagcagtgggaagccttgcgcaccctgcggcgc
aaactggcacaggaacacagcgtgccgccttacgtcatcttccccgactcgaccctgttg
gagatgctgcgcgagcaacccaccaccctggccgagatggcccgggtcagcggcgtgggt
gcgcgcaagctggagcgttatggccaagccttcctcgaagtgctcggcggccaggccgag
gcgccgaaggaagtcgccgatattcgccatgaattgatcagcctggcacgcgccggcatg
accccgattcagatcgccggccaactgcaatgttcggagaaaaacgtctacaccctgttg
gctgaatccatcggcaagcaacagctgtccctggagcaggcccttgatttgccggaagat
ttgctcggcgaaatccaagacgccttcctcgatggagaaggcgaattgccagccgtttcg
gagattgcgccgctgtttaccgggcgtgtgcctgagggtgttttgtactgtgttcgggcg
gcattgcagtcggaattcgaaatttag
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