Pseudomonas gorinensis: U771_26880
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Entry
U771_26880 CDS
T02969
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
psk
Pseudomonas gorinensis
Pathway
psk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
U771_26880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psk03400
]
U771_26880
Enzymes [BR:
psk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
U771_26880
DNA repair and recombination proteins [BR:
psk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
U771_26880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AAA_11
AAA_12
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AHC37854
LinkDB
All DBs
Position
complement(5888065..5891739)
Genome browser
AA seq
1224 aa
AA seq
DB search
MSSKPLALAFPLKGSQLIEASAGTGKTFTISALYLRLVLGHGGDESGFGRELLPPQILVV
TFTDAATKELRERIRIRLAEAARFFRDEIKQPDALIAELREHYLPEQWPACANRLDIAAQ
WMDEAAVSTIHSWCQRMLREHAFDSGSLFTQTLETDHSDLLGEVLRDYWRLFCYPMHDDA
LNWVRNNWGGPAALMPRVRALFGSERPTDEHREPAELINACLQERRAALVALKAPWPQWA
AELRDICLQAVAAKAVDGRKMQARYFEPWFEKISAWAADETLEQLDIGTGFTRLTPDGMA
EAWKGDPPHHPGIDAMVGLKAALDALPIPDAAVLQHAAGWVGKRFEDEKRRRAEMGFDDM
LIRLNAALQSDGGERLASVIREQFPVALIDEFQDTDPVQYSIFDSIYRIEENHLDSGLFL
IGDPKQAIYAFRGADIYTYLRARQSTTGRHHTLGTNFRSSHAMVEAVNHVFQRAEKGRGA
FLFRGPDGENPVPFQPVLSQGRKEQLQVDGQTLPAMTLWHLPTDQPISNVVYRQQLAAAC
ATQIVELLNAGQQGHAGFLQEDGSVNGVLPSAIAILVRDGKEAQAVRGELAARGVRSVYL
SDKDSVFAAQEAHDLLAWLKACAEPDVERPLRAALACVTLNLSLPELERLNQDELAWESR
VMQFRGYRTIWRTQGVLPMLRRLLHDFKLPQTLMARSDGERVLTNLLHLSELLQQAASEL
DGEQALIRHLAEHLALSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYDLVFLPFICSAK
PVDGSRLPLHYHDENGKSQVSLRPTAALIAQADDERLAEDLRLFYVALTRAKHACWLGIA
DLKRGNSSSSVLHLSALGYLLGAGASLGESAGLARWLLDLQEGCPAIHYTHVPEAQDSVF
HPPRNEATLLPPLLPKRKAAESWWIASYSALRIGDSMSAASLEAPESPQAQKLFDDERLD
PDAPREVAASGGDIHRFPRGPNPGTFLHGLLEWAGEEGFNVTSEAIEKAVGARCNRRNWE
GWIVTLSGWLSHLLQTALPLHNDQVTLSGLQQYQVEMEFWFASHKVDVLALDKLVCQYTH
NGVSRVAAEPVLLNGMFKGFIDLTFEHDGRYYVADYKSNWLGPDDSAYTHAAMELSILEH
RYDLQYVLYLLALHRQLKARLPGYDYDRHVGGALYLFLRGSQAASQGAYFTRPPRELIEG
LDLLFQGQSIPPKAEPAWEQGVLL
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcaaacccttggccttggcattcccgctaaaaggcagccagttgatcgaagcc
agtgccggtaccggcaagaccttcaccatctccgccctgtacctgcgcctggtactcggc
cacggtggtgacgagtcaggcttcggccgcgaactgctgcccccgcaaatcctcgttgtg
accttcaccgacgccgccaccaaggagctgcgcgaacgcatccgtatccgcctggccgaa
gctgcgcggttcttccgcgatgaaatcaaacaaccggatgcgctgatcgctgagctgcgc
gagcactatctgcccgaacaatggcccgcgtgtgccaatcgcctggatatcgccgcgcaa
tggatggacgaagcggcggtctcgaccatccacagttggtgccagcgcatgctgcgcgaa
catgcgttcgacagtggcagcctgttcacccagaccctggaaaccgaccatagtgacctg
ctcggcgaagtgctgcgcgactattggcggctgttctgctacccgatgcacgacgatgcg
ctcaactgggtgcgcaacaactggggcgggccggccgcgctgatgccgcgagtacgtgcg
ttgttcggcagcgagcggcccactgatgagcatcgtgagcccgccgaactgatcaacgcc
tgcctgcaagagcgtcgagcagccctcgttgcgcttaaagcgccctggccacaatgggcc
gccgagttgcgcgacatctgcctgcaagccgtcgccgccaaagccgtcgatggtcgcaag
atgcaagcccgctacttcgaaccctggttcgaaaaaatcagcgcctgggccgcggatgaa
accctcgaacaactggatatcggcaccgggttcacgcgtctgacccccgatggcatggcc
gaagcctggaagggggatccgccgcaccacccgggtatcgacgccatggtcggcctcaaa
gccgccctcgatgcgttgccaatccccgatgccgccgtgttgcaacacgccgctggctgg
gtcggcaagcgcttcgaagacgaaaaacgccgccgtgccgaaatgggcttcgacgacatg
ctgatccgcctcaatgccgccttgcaatcagacggtggcgagcgtcttgccagtgtgatc
cgcgagcagtttccggtcgccctgatcgatgagttccaggacaccgacccggtgcaatac
agcatcttcgacagcatctaccgcatcgaagaaaaccacctcgacagtggcctgttcctg
atcggcgaccccaagcaggcgatctacgcgttccgtggcgcggatatctacacgtacctg
cgcgcccgccaatccaccactggtcgtcaccacaccctgggcaccaacttccgctccagc
catgcgatggtcgaggcggtgaaccatgtgttccagcgtgccgaaaaaggccgcggcgcg
ttcctgttccgcgggccggatggcgaaaacccggtgccgttccagccggtgttgtcccag
gggcgcaaggagcaattgcaggtcgatggccaaacgctgccggcgatgacgctctggcac
ctgcccaccgatcagccgatttccaatgtggtttatcgccagcaacttgccgctgcctgc
gccacgcagattgttgaactgctcaacgctgggcagcaaggtcacgcgggtttcctgcaa
gaagacggcagcgttaacggcgtgctgccttcagctatcgccatcctggtgcgcgacggc
aaggaggcccaagccgtgcgcggcgaattagccgcccgtggtgtgcgcagtgtctacctg
tccgacaaggactccgtgttcgccgcccaggaagcccatgatctgttggcctggctcaag
gcctgtgccgagcccgacgtcgagcgtccgttgcgcgcagcgctggcctgcgtcaccttg
aacctgtcactgcctgaactggaacgtctgaaccaggacgagctggcgtgggaaagccgc
gtcatgcagttccgcggctaccgtacgatctggcgtacccagggcgtgctgccgatgctg
cggcgcctgctccatgacttcaaattgccgcaaaccctgatggcccgcagcgatggcgag
cgagtactgaccaacctgttgcacctcagtgagttgctgcaacaagcggcgtctgaattg
gacggcgaacaggccctgatccgccatctggccgaacacctggcgctctccggccaagca
ggtgaagaacagatcctgcgcctggaaagcgatgagcaactggtcaaagtggtgaccatc
cacaagtccaaggggctggaatacgacctggtattcctgccatttatctgttcggccaaa
ccggtggatggcagtcgcttgccgctgcattaccacgatgaaaacggcaagtcccaggtc
agcctgcgcccgacggccgcgttgatcgcccaagccgatgacgagcgcctggccgaagac
ctgcgcttgttctacgtggccctgacccgggccaaacacgcctgctggctgggcattgcc
gacctcaagcgcggcaatagcagcagctctgtgctgcacctttcggcgctgggttatttg
ctgggcgcgggcgcgtccctgggcgaatctgctggcctggcgcgctggctgctggatctg
caggaaggctgccccgccatccactacacccacgtacccgaagcgcaagacagcgtgttt
catccgccgcgcaacgaagccacgctgctcccccccttgttacccaaacgcaaggcggcg
gaaagctggtggatcgcgtcctacagcgccttgcgcatcggtgacagcatgagcgccgcc
agcctcgaagcgccggaaagcccacaagcccagaagctgttcgacgacgaacgtctcgac
cctgatgcaccgcgtgaagtggcggcgtccggcggcgacattcaccgtttcccacgtggc
ccgaatccagggaccttcctccatggcctgttggagtgggcgggcgaggagggcttcaac
gtgacgtcggaggcgatcgaaaaagccgtgggcgcgcgttgcaatcgacgtaactgggaa
ggctggatcgtcaccctcagcggttggctgagccacctgttgcaaacagcgctgccgttg
cacaacgaccaggtcacgctcagcggcctgcagcaataccaggtcgaaatggagttctgg
ttcgccagtcataaagtcgacgtgctcgccctcgataagctggtgtgccagtacacccac
aacggtgtctcgcgggttgccgccgagccggtcctgctcaatggcatgttcaaaggcttt
atcgacctgacgttcgagcatgacggccgctactacgtggcggattacaaatccaactgg
ctcggccccgacgactcagcctacacccacgcggccatggagctgtcgatcctcgaacat
cggtatgacttgcagtacgtactgtacctgctggccctgcaccgccagctcaaggcgcgc
ctgccgggctacgactacgaccgccatgtcggtggcgcgctctacctgttcttgcgcggc
agtcaggccgccagccagggggcgtatttcacccgccctccacgggagctgatcgagggc
ctggatttgctcttccaaggtcaatcgataccgcccaaggccgaacccgcctgggaacaa
ggagtgttgctatga
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