Pseudomonas gorinensis: U771_27080
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Entry
U771_27080 CDS
T02969
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
psk
Pseudomonas gorinensis
Pathway
psk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U771_27080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psk03019
]
U771_27080
03016 Transfer RNA biogenesis [BR:
psk03016
]
U771_27080
Enzymes [BR:
psk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
U771_27080
Messenger RNA biogenesis [BR:
psk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
U771_27080
Transfer RNA biogenesis [BR:
psk03016
]
Prokaryotic type
tRNA degradation factors
U771_27080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
KH-I_KHDC4-BBP
KH_2
KH_N4BP1_2nd
S1_2
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
AHC37889
LinkDB
All DBs
Position
complement(5939780..5941885)
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AA seq
701 aa
AA seq
DB search
MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVTVLVTVVGAKQADPGKGFFPLS
VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST
SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQLKASSLDMVV
AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAVKELAAEAAKPTWTWAAAPEA
TELLGAIRAEFGEAISQAYTITIKADRYARLGELKDQVVAKLSGEEGQPSASDVKAAFGE
IEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA
RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAAD
VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILT
DILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQ
IIGQSRTELSENAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG
ETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARV
EKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDVAAAKASGV
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtgaacccggttatcaaaaaattccagttcggtcagtcgaccgttaccctcgagacaggc
cgtatcgcccgtcaagcttccggcgcagtgctggttaccgttgacgacgacgtcaccgta
ttggtgaccgttgtaggtgccaagcaagccgatccaggcaagggtttcttccctctgtct
gtccactaccaggaaaagacttacgctgccggtaagatccctggcggtttcttcaagcgc
gaaggccgtccttccgagaaagaaaccctgacttcccgactgatcgaccgtccgatccgt
ccgctgttcccagaaggcttcatgaacgaagtgcaggttgtctgcaccgtcgtttccacc
agcaagaaaaccgatccggacatcgctgcgatgatcggtacttcggctgccctggccatc
tccggtattcctttcgatggcccgatcggcgctgcccgcgttgccttccacgaaagcacc
ggctacctgctgaacccgacttacgagcaactgaaagcttcgagcctggacatggtcgtt
gccggtacttcggaagccgtgttgatggttgaatcggaagccaaagagctgaccgaagac
cagatgctgggcgcggtactgtttgctcacgacgagttccaggtcgtgatcaacgccgtt
aaagaactggccgctgaagctgccaagccaacctggacctgggctgctgccccggaagcc
accgaactgctgggcgctatccgtgccgagttcggcgaagcgatctcccaggcctacacc
atcaccatcaaggccgaccgttacgctcgcctgggtgagctgaaggatcaggttgttgcc
aagctgtccggcgaagaaggccagccttccgccagcgacgtcaaggctgcattcggtgaa
atcgaataccgcaccgttcgcgagaacatcgttaacggcaagccacgtatcgacggccgt
gacactcgcaccgtgcgtccgctgaacatcgaagtcggcgttctgccgaagactcacggt
tcggcgttgttcactcgtggtgaaacccaagcgctggttgttgcgaccctgggtactgcc
cgtgacgcacagctgctggacaccctggaaggcgagaaaaaagacccgttcatgctgcac
tacaacttccctccgttctcggtgggcgagtgtggtcgcatgggcggtgctggtcgtcgc
gaaatcggtcacggccgtctggcccgccgttcggttcaggccatgctgcctgctgctgac
gtgttcccgtacaccatccgtgtggtgtcggaaatcaccgagtccaacggttccagctcc
atggcttccgtttgcggtgcttccctggcgctgatggacgctggtgtgccgatgaaggca
ccggttgccggtatcgccatgggcctggttaaagaaggcgagaagttcgccatcctgacc
gacatcctgggtgacgaagaccacctgggcgacatggacttcaaagtcgctggtaccgct
aaaggtgttaccgcgctgcagatggacatcaagatcaagggcatcaccgaagagatcatg
gagatcgccctgggccaagccctggaagcgcgcctgaatatcctcggtcagatgaaccag
atcattggtcagtcccgtaccgagctgtcggaaaacgctccgaccatgatcgcgatgaaa
atcgacaccgacaaaatccgtgatgttatcggtaaaggcggcgcgaccatccgtgcgatc
tgtgaagagaccaaggcttcgatcgacatcgaagacgacggctcgatcaagatcttcggc
gaaaccaaggaagctgcagaggccgcgcgtcagcgcgttctgggcatcaccgcggaagcc
gagatcggcaagatctatgtcggtaaagttgaacgcatcgtcgacttcggcgcattcgtc
aacatcctgccgggcaaagacggtctggttcacatctccatgctgagcgacgctcgtgtt
gagaaagtgaccgacattctgaaagaaggccaggaagtggaagtgctggtactggacgtg
gacaaccgcggccgtatcaagctgtccatcaaggatgtagcagcagccaaggcttcgggc
gtttaa
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