Pseudomonas gorinensis: U771_29620
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Entry
U771_29620 CDS
T02969
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
psk
Pseudomonas gorinensis
Pathway
psk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U771_29620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psk03019
]
U771_29620
Enzymes [BR:
psk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
U771_29620
Messenger RNA biogenesis [BR:
psk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
U771_29620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AHC38387
LinkDB
All DBs
Position
6487986..6489878
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AA seq
630 aa
AA seq
DB search
MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMN
PQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSNDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRSLL
AHLITHGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGEV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIADGDLMGFDASAVEAEKPEVRERPDVRNPRNPRGPKGDGPNGGGGGGG
RRDKGKDKGGKEKAPTNGRGERPAREQKPREGTPAREQRQPSQPPRAASDRAPDEFLDDD
VDNFGNRVDYVPQAKPAQGRGRRPGAPAQGAGAGAGAPRGGQPQGGRQNGPRNSSGGTTG
TPPAKRSGPRNGAPRDGQARREDSRSNNRRPARDDQPRLSEPAVQNPRGGPAPKIIHKES
KADRFPTPEQLDQLPGRPRGEKPALLTRNR
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtccgcgccatcgaggcagcgggc
tataccgagcctactccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgac
ctgatggttgcggctcagacaggtactggtaaaaccggcggcttcgccctcccgattctg
gagcggttgttccccaacggtcatccggacaaatcccagcgtcacggcccgcgccaaccg
cgcgtcctggtcctgacccctacccgcgaactcgccgcccaggtgcatgacagcttcaag
ctgtatgcccgcgacctgaagttcgtcagcgcctgcatcttcggcggcgtcggcatgaac
ccacaggttcaggccatgtcccgcggtgtcgacgtgctggtcgcctgcccaggtcgcttg
cttgacctgtgcggccaaggcagcgtcgatttgtcccacgtggaaatcctcgtgctggac
gaagccgaccgcatgctcgacatgggctttgtccatgacgtgaagaaggtcctcgcccgc
ctgccggccaaacgtcagaacctgctgttctcggcaacgttctccaacgacatcaccgcc
ctggccggtaagctgctgcacaacccggaacgtatcgaagtcacgccgccgaacaccacg
gtcgagcgtatcgagcagcgcgtgttccgcctggccgccagccacaagcgttcgttgctg
gcgcacctgatcacccacggcgcgtgggaacaggtcctggtgttcacccgcaccaagcac
ggcgccaaccgcctggccgagtacctggacaagcacggcctgaccgccgtcgccatccac
ggcaacaagagccagaacgcgcgtaccaaggccctggccgacttcaaggccggtgaagta
cgcatcctggtagccaccgatatcgccgcgcgcggcctggatatcgaccagttgccccac
gtggtcaacttcgaactgccaaacgtcgacgaagactatgtgcaccgtatcggccgtacc
ggccgcgccggtcgttcgggcgaggccatttccctggtcgcgccggacgaagaaaaactg
ctgaaaagcatcgagcgcatgaccaagcagaaaatcgccgatggcgacctgatgggcttc
gatgccagcgccgtcgaggctgaaaagcctgaagtacgcgagcgtccggacgtgcgtaac
ccacgcaacccacgcggtccgaagggcgatggcccgaacggcggcggtggtggcggtggc
cgtcgtgacaagggcaaggacaagggcggcaaggaaaaagcgccaaccaacggccgtggc
gaacgcccggcccgcgagcagaaaccccgtgaaggcaccccggcccgcgaacagcgccag
ccgagccagccaccacgcgccgcatccgatcgtgccccggacgagttcctcgatgacgac
gtggataacttcggtaaccgcgtcgactacgtgccccaggccaaaccggcccagggccgt
ggccgtcgtccaggcgcaccggcacaaggtgctggcgctggcgctggtgctccacgtggc
ggccagccgcagggcggtcgtcagaacggccctcgcaacagcagcggcggcaccaccggc
acaccaccggccaagcgcagcggcccgcgcaatggcgcaccccgtgatggccaggcgcgt
cgcgaagattcgcgcagcaacaaccgccgcccggcccgtgacgaccagccacgcttgtcc
gaacccgccgtgcagaacccacgcggtggcccggcgccaaagatcatccacaaggagtcg
aaagccgaccgcttcccgacaccggagcagttggatcaactgccaggccgtcctcgtggt
gaaaaaccagcgctgctgacccgcaaccgctga
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