Pseudoalteromonas sp. KAN5: KAN5_00340
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Entry
KAN5_00340 CDS
T10721
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pska Pseudoalteromonas sp. KAN5
Pathway
pska02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pska00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
KAN5_00340 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pska03021
]
KAN5_00340 (rpoD)
Transcription machinery [BR:
pska03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
KAN5_00340 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
SQS_PSY
Motif
Other DBs
NCBI-ProteinID:
BDF93196
LinkDB
All DBs
Position
complement(37782..39662)
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AA seq
626 aa
AA seq
DB search
MYQLIRVEETISMDPTPQSQLKLLIQKGKEQGYLTFAEVNDHLPQDIIDSDQVEDIISMI
NDMGIKVSENAPDADELMMQETTTDEDAAEAAAAALATVDKEIGRTTDPVRMYMREMGTV
ELLTREGEIVIAKRIEEGINQVQISVAEYPEAITYLLEQWDKFEAEEMRLSDIISGFFDP
NEDEAPISATHIGSELSEKELDDEDDDDVDSDDDEDDEEVDTGPDPEEARVHFENLRDLY
NKARDTFESKGRSHPESQAAIFEIGELFRTFKLVPKQFDRMVNNMREMMDRVRVQERIIM
KQAVQIAKLPKKTFVKHFANNETDTAWIDLEIAANEKYSAKLDEIKPEIIRCINKLCVIE
ESTGLSIERIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEG
NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISR
QMLQEMGREPNPEELAERMMMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTI
DSPIDSATMESLRGATNDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIR
QIEAKALRKLRHPSRSDLLKSFLDAK
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
ttgtatcaacttatcagagtggaagaaacaatctctatggatccaactcctcagtcacaa
ttaaaacttctgattcaaaaaggtaaagagcaaggttacttaacttttgcagaagttaat
gatcaccttccacaagatattatcgattcagatcaagtagaagatatcattagcatgatc
aatgatatgggtatcaaggttagcgaaaatgcgcctgatgccgatgaattgatgatgcaa
gaaacgacaacagatgaagacgcagcagaagctgcagccgctgcgcttgctactgtagat
aaagaaatcggccgtactacggatccggttcgtatgtacatgcgtgaaatgggtactgtt
gaactacttacccgtgaaggcgaaattgttatcgccaagcgtattgaagaagggatcaac
caagtacaaatatcggttgctgaataccctgaagcaattacttatcttcttgagcagtgg
gataaatttgaagcagaagagatgcgcttaagcgacattatttctggtttctttgatcct
aatgaagatgaagcccctatttcagccacgcacattggttctgaattaagcgaaaaagag
cttgatgatgaagacgacgatgatgtggatagtgatgatgatgaagacgatgaagaagta
gataccggcccagatcctgaagaggcccgtgtacactttgaaaatcttcgtgatctttac
aataaagcacgcgacacatttgaaagtaaaggtcgttcacaccctgaatcacaagccgcg
atttttgaaattggtgaactattcagaacatttaaattagtaccaaaacagtttgaccgc
atggttaataacatgcgtgaaatgatggatagagtgcgtgtgcaagaacgtatcatcatg
aagcaagctgtacaaattgctaaattaccaaagaaaacttttgttaagcattttgctaac
aatgaaactgatactgcgtggattgaccttgaaatcgctgctaatgaaaaatattcagcg
aagttagatgaaatcaaaccagaaatcattcgttgtattaataaactgtgtgtaatagaa
gaaagcacaggcttaagcattgaacgtattaaagacattaaccgccgcatgagcattggt
gaagcgaaagctcgccgtgcgaaaaaagaaatggttgaagctaacttacgtcttgtaatt
tcaattgctaaaaaatacaccaaccgtggcttacaatttttggacttaatccaagaaggt
aacattggtttgatgaaagccgttgataagtttgaatatcgccgtggttataagttttca
acttatgctacatggtggatccgtcaagcaatcacccgctctatcgctgaccaagcgcgt
acaatccgtattccggtacatatgattgaaacgattaacaaacttaatcgtatttctcgt
caaatgctgcaagaaatgggtcgtgagccaaatccagaagaattagcagagcgcatgatg
atgcctgaggataagatccgtaaggtacttaaaatcgcaaaagagccaatttcaatggaa
acaccaatcggtgatgatgaagattcgcacttaggtgactttatcgaagacaccactatt
gattcgccaattgattcggcaacaatggagtctcttcgtggtgctaccaacgatgtgcta
gcaggccttaccgcccgtgaagcaaaagtattacgtatgcgttttggtatcgatatgaat
actgaccataccctagaagaagtaggtaaacagtttgacgtaacccgtgagcgtattcgt
caaatcgaagcgaaggcactgcgtaaactacgccacccttctcgctctgacttactgaaa
agcttcttagacgctaagtaa
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