Pseudoalteromonas sp. KAN5: KAN5_01760
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Entry
KAN5_01760 CDS
T10721
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pska Pseudoalteromonas sp. KAN5
Pathway
pska03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pska00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KAN5_01760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pska03019
]
KAN5_01760
Enzymes [BR:
pska01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KAN5_01760
Messenger RNA biogenesis [BR:
pska03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KAN5_01760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
DUF937
AAA_22
UvrD-helicase
Helicase_RecD
Cas3-like_C_2
AAA_11
Motif
Other DBs
NCBI-ProteinID:
BDF93338
LinkDB
All DBs
Position
199552..200796
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AA seq
414 aa
AA seq
DB search
MSAATFTDLHLDPLLLKALELNEYQTPTAIQLQAIPLILAGHDVMGSAQTGTGKTAAFVL
PLLHKLLNSNKKDEQGTARILILTPTRELAQQVFASFEKYAQGSDIKGALAYGGASIGPQ
VKAMKDAQVVVATPGRLLDHIIKGSIKLSSVDSLVFDEADRMLDMGFIDEIKRILRHVPS
DRQTLLFSATFDDSVFELSKKLLKDPKLIEVDKRNSAAVEVEQVIYAVDEDRKRELVSHM
IGMKNWRQVLIFTRTKQMADKLAKEMCKDGLKTESIHGDKSQGARDRALQNFKEGTTRVL
VATDVAARGLDISSLKYVINFELPYIAEDYVHRIGRTGRAGEQGLAMSLVSLDEQWLLEE
IEVLLDTRLTPQWLTGYEPDPNKKPKDNRKNTNKSRKERDKKRILGKKSSNRRR
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgtctgctgcaacctttacggatcttcatctcgaccctttactgcttaaagcgcttgag
ctcaatgaatatcaaacgcctacggctattcaactacaagccattccattaattttagcc
ggtcacgatgtgatgggcagtgcacaaacgggcacaggtaagacagcggcatttgtgctt
cctttattacataaattattaaatagtaataagaaagatgagcaaggtacggcgcggata
ctaattttaacgcctacccgagagcttgctcagcaagtatttgccagctttgaaaagtac
gcgcaagggtctgatattaaaggggcattagcctatggtggcgcaagcattggcccgcaa
gttaaagcaatgaaagacgcgcaagtggtggttgcaacgccaggacgattacttgatcac
atcatcaaaggcagtattaaactctcaagcgtagattctttggtatttgatgaagctgat
cgtatgctagacatgggctttattgatgaaattaagcgaattttgcgccatgtaccaagt
gatcggcaaaccttattattctcagcgacttttgatgacagcgtgtttgaactgagtaaa
aagttacttaaagatcctaaattaattgaagttgataagcgtaactcggctgctgtcgaa
gttgaacaagtgatttacgcggttgatgaagatcgtaaacgtgagctagtttcacacatg
attggtatgaaaaattggcgccaagtgcttattttcacacgtactaaacaaatggccgac
aaacttgctaaagaaatgtgcaaagatggcctgaaaacagaatctatccatggtgataaa
tcacaaggcgcacgtgatagagcattacagaactttaaagaaggtacgacccgtgtactc
gttgctaccgatgtcgctgctcgcggcttagatattagctcattaaagtatgtgattaac
tttgaactaccatatatagcagaagactacgtacaccgcattggccgtactggccgtgca
ggtgaacaaggtttagctatgtcactggtgagtcttgatgaacagtggctactagaagaa
attgaagtattattagatacccgccttactccgcagtggttgaccggctatgagcccgac
ccaaacaaaaagcctaaagataatcgaaaaaatacgaataaatcgcgaaaagaacgggat
aaaaagcgaattttaggtaaaaaaagttcaaaccgacgccgataa
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