Pseudoalteromonas sp. KAN5: KAN5_08330
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Entry
KAN5_08330 CDS
T10721
Name
(GenBank) hypothetical protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pska Pseudoalteromonas sp. KAN5
Pathway
pska03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pska00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KAN5_08330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pska03019
]
KAN5_08330
03009 Ribosome biogenesis [BR:
pska03009
]
KAN5_08330
Enzymes [BR:
pska01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KAN5_08330
Messenger RNA biogenesis [BR:
pska03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KAN5_08330
Ribosome biogenesis [BR:
pska03009
]
Prokaryotic type
rRNA processing factors
KAN5_08330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
BDF93995
LinkDB
All DBs
Position
complement(975271..978699)
Genome browser
AA seq
1142 aa
AA seq
DB search
MKRMLINATQQEEMRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GADRHGFLPLKEIARTYFPQGYTFHGRPNIRDVIKEGQEVIVQVDKEERGQKGAALTTFI
SVAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSRLELPKGMGLIVRTAGVGKSFEEL
NYDLKALLVHWDAIQQASDSGKAPFLIHQESNVIFRAIRDYLRRDIGEILIDKARVFEEA
KAHIERFRPDFMSRVKLYQGEVPLFTHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSSKATKGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPPRHQREVEN
RLKDAVRPDRARVQIGKISRFGLLEMSRQRLRPSLGEASQGPCPRCSGQGTIRSNESIAL
SILRLIEEEAIKDNTSQVNAQVPVAVASYLLNEQRRSVHRIEKRHSCDVVIIPNQHMETP
HYEVIRLRKDETIEAASYEQITAPEPEVYETSKAPTVAVREEPVLKGVVMPSTPAPQAQA
KPAAPQAAAVQPQVSLFTAIGNWFKALFATPAEQTENKEQQQKSANESRNNQRRNNDGDS
RRRNNQRRRNNSRGKSQNERADRTAEETPATANNEQQERNDNRNKRRRNPNSRKRNDTRN
DDNKVTAAKTEAKADVKDTTQAKNVAVDTPEQKPKVRRQRRNLRKKVRLQDENAPTVETT
NETAKAEQQTAPAVTEKPAKPVVEQQDEVKAVAETTPVDAPEQKVEHTTSSEQTAPSEQD
ATQTDEEQGQTRTRSRRSPRHLRAAGQRRRRPEGEEAAPTQGTQPPAFIPVADQAAAEYE
AELKAKQAAEAGETTVAEEVPVVAEPAATTAPEKVVEEAPVVAEPTAETAPEEVAEEAPV
VAEPTAETAPEEVVEEAPAVTEPTAETVPEEVVEEAPAITEPATETAPEEVVKEASVVAE
PTAETAPEEVVEEASVVAEPATETAPEEVVEEAPVVAEPAAETTPEEVVEEAPVVAEPAI
ETAPEEVVEEASVVAEPAIETAPEEVVEEAPVVAEPAAETAPVAEKEPNAKPVTHTKTVI
ASGKASAPMAQPTPVADSDVLHTPKAMAHDKREVIPDSGLRAGSIKPAGRASAAMTKTMS
VE
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgctaatcaatgcgacgcagcaagaagaaatgcgcgtagcactggttgat
ggccagcgcctgtatgatttagatatcgaaagcccgggtcacgaacaaaaaaaagccaat
atttataaaggcaaaatcacacgtatcgaaccgtcattagaagcagcctttgttgattac
ggcgctgaccgtcacggattcctaccattaaaagaaatcgcccgtacttacttcccacaa
ggctatactttccacggtcgtccaaatattcgtgacgtgatcaaagaaggtcaagaagtc
attgtccaagttgacaaagaagagcgtggccaaaaaggcgcagccctgaccactttcatc
agtgttgccggtagctaccttgttttaatgcctaacaaccctcgtgctggcggtatttct
cgtcgtatcgaaggtgatgagcgtactgaacttaaagaagcactaagtcgcttagagctg
cctaaaggcatgggtttaatcgtacgtaccgcaggtgttggtaaatcgtttgaagaacta
aactacgatttaaaagctctattagtacactgggatgccattcaacaagcatcagacagc
ggtaaagccccctttttgattcaccaagaaagtaacgtaatcttccgcgctatccgcgat
tatttacgtcgtgacattggtgagatcctgattgataaagcccgtgtatttgaagaagca
aaagcacacattgagcgttttcgccctgacttcatgagccgtgtaaaactttaccaaggt
gaagtaccactgttcacacattatcaaattgaaagccaaattgagtcagcattccaacgc
gaagtgcgccttccttctggtggttcaattgtgatagacccaactgaagccttaacttct
atcgatatcaactcatcaaaagccactaaaggcggcgatatcgaagaaacagcgcttaac
accaacttagaagcagcagatgaaattgcacgtcaattacgcttacgcgacttaggtggt
ttaatcgttatcgactttattgatatgacgccaccgcgtcaccagcgtgaagtagaaaac
cgcttaaaagatgcggttcgccctgatcgtgctcgagtacagattggtaaaatttctcgt
tttggtttacttgaaatgtcacgccaacgcctacgcccttcacttggtgaagcaagccaa
ggcccatgcccacgttgtagtggtcaaggtactattcgttcaaatgaatcgattgcattg
tcaatcctacgcttaattgaagaagaagcgattaaagacaatacctcacaagttaatgca
caagtgcctgtagcagtagcttcatacttgttaaatgagcaacgtcgtagcgtacaccgt
attgaaaaacgtcacagctgtgatgtggtgatcattccaaatcaacacatggaaactcct
cactacgaagtaattcgtttacgtaaagatgagaccattgaagcagcaagctacgagcaa
atcacagcacctgaaccagaagtatacgaaacatctaaagcaccaacggttgcagtacgt
gaagagcctgtactaaaaggtgtggttatgccatcaacaccggcaccacaagctcaagca
aaacctgcggcaccacaagctgctgcggtgcaaccgcaagtaagtttatttactgccatt
ggcaattggttcaaggctttatttgcaacacctgctgagcaaactgaaaataaagagcaa
cagcaaaaatcagctaacgagtcgcgaaataatcagcgccgtaataatgatggtgattct
cgtcgtcgcaataaccagcgccgtcgtaataattcacgtggtaaatcacaaaacgagcga
gcagaccgtactgctgaagagacaccagcaacagcaaacaacgagcaacaagaaagaaac
gacaaccgcaataaacgtcgtcgtaatcctaattctcgtaaacgtaacgacactcgtaac
gatgacaacaaagttaccgcagcaaaaacagaggcaaaagcagacgttaaagacactacg
caagctaaaaatgtagctgttgacacacctgagcagaagcctaaagttcgtcgtcaacgc
cgtaacttacgtaagaaagtgcgcctgcaagatgaaaatgcaccaaccgttgaaacaaca
aacgaaacagctaaagctgaacaacaaacggcacctgctgttactgaaaaaccagctaag
ccagttgtagagcaacaggatgaagtaaaagcagtcgctgaaacaactcctgtagacgca
cctgagcaaaaagttgaacacacaacttcgagtgagcaaacggcacctagcgaacaagac
gccacacaaactgatgaagagcaaggtcaaacacgtacacgttcacgccgctcaccacgt
catttacgtgctgccggtcagcgccgtcgtcgccctgagggtgaagaagctgcaccaaca
caaggtacacaaccgccagcatttataccggtagccgaccaagctgctgctgaatatgaa
gctgagttaaaagcaaagcaagccgctgaagctggtgaaacaactgttgctgaagaagtt
cctgttgttgctgaacctgctgccacaactgcaccagaaaaggtagttgaagaagcacct
gttgttgctgaaccaactgctgaaactgcgccagaagaagttgctgaagaagcacctgtt
gttgctgaaccaactgctgaaactgcaccagaagaagttgttgaagaagcacctgctgtg
actgaaccaactgctgaaactgtaccagaagaagttgttgaagaagcacctgctattact
gaaccagcgactgaaacggcaccagaagaagttgttaaagaagcatctgttgttgctgag
ccaactgctgaaactgcaccagaagaggttgttgaagaggcatctgttgttgctgaacca
gcgactgaaacggcaccagaagaagttgttgaagaagcacctgttgttgctgagccagca
gctgaaactacaccagaagaagtcgttgaagaagctcctgttgttgctgaaccagctatt
gaaacggcaccagaagaagtcgttgaagaagcatctgttgttgctgaaccagctattgaa
acggcaccagaagaagtcgttgaagaagcgcctgttgttgctgagccagcagctgaaacc
gcaccagtggcagagaaagagcctaatgcaaaacctgtgacacacactaaaacagtgatc
gcctcaggtaaagcaagtgcaccgatggcccagccgactccagttgcagatagcgacgtg
ttacatacgccaaaagcgatggctcacgacaaacgtgaagttattcctgatagtggctta
cgtgccggctctatcaagcctgcgggacgtgcaagcgctgcaatgactaaaaccatgagt
gtcgaataa
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integrated database retrieval system
